CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98338	Canola	cytosol	80.82	82.8
CDX98342	Canola	cytosol	71.7	75.89
CDX67770	Canola	cytosol	67.63	71.94
CDX98339	Canola	cytosol, extracellular	70.02	71.22
CDX98334	Canola	golgi, mitochondrion, plasma membrane	52.76	69.62
CDX67768	Canola	cytosol	65.95	67.4
CDX98340	Canola	cytosol	33.33	63.47
CDX95484	Canola	cytosol	52.52	62.22
AT3G58820.1	Thale cress	cytosol	56.35	56.9
CDY18865	Canola	plastid	38.37	52.63
CDY29185	Canola	cytosol	48.2	47.07
CDY58541	Canola	cytosol	50.6	46.17
CDY65605	Canola	cytosol	29.98	45.13
CDY00593	Canola	cytosol	39.33	44.44
CDX84742	Canola	cytosol	48.2	44.18
CDY49258	Canola	cytosol	50.36	44.03
CDY65604	Canola	cytosol	50.84	43.8
CDY67935	Canola	cytosol	46.28	43.57
CDY65456	Canola	peroxisome	49.64	42.51
CDY34798	Canola	peroxisome	46.76	42.48
CDY50412	Canola	cytosol, nucleus, peroxisome	44.84	42.21
CDX76838	Canola	cytosol	46.28	42.05
CDY29195	Canola	cytosol	49.16	38.03
CDY07824	Canola	cytosol	47.24	35.95
CDY29196	Canola	cytosol	46.28	35.09
CDX89484	Canola	cytosol	52.04	34.94
CDY29197	Canola	cytosol	47.0	34.09
CDX67782	Canola	cytosol	34.53	33.03
CDX67785	Canola	cytosol	15.11	32.81
CDX67783	Canola	cytosol	33.09	32.32
CDX98354	Canola	cytosol	32.85	32.16
CDY07822	Canola	cytosol	45.56	32.09
CDX98355	Canola	cytosol	32.37	31.99
CDX98353	Canola	cytosol	33.33	31.88
CDX67786	Canola	cytosol	13.19	30.9
CDY07837	Canola	cytosol	39.57	30.33
CDX67788	Canola	cytosol	23.26	29.94
CDY59410	Canola	cytosol	36.21	29.84
CDY33289	Canola	cytosol	35.97	29.64
CDX98357	Canola	cytosol	23.98	28.9
CDX71909	Canola	cytosol	35.25	28.77
CDY57500	Canola	cytosol	32.37	28.48
CDX89015	Canola	cytosol	31.65	27.85
CDY00610	Canola	mitochondrion	32.85	26.1
CDY06017	Canola	nucleus	35.49	25.56
GSMUA_Achr2P13780_001	Banana	cytosol	20.62	20.92
CDY06019	Canola	cytosol	35.49	17.09
CDX98352	Canola	cytosol, nucleus, plasma membrane	29.02	15.94
CDX67781	Canola	cytosol	29.5	15.71

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX67769	ProteinID:CDX67769	ProteinID:CDX67769.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00098959001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFAM:PF08387
PFscan:PS50181	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF81383	UniParc:UPI0004EDDB7D
SEG:seg	:	:	:	:	:

Description

BnaA07g18090D

Coordinates

chrLK031787:-:2180863..2182414

Molecular Weight (calculated)

47019.5 Da

IEP (calculated)

6.971

GRAVY (calculated)

0.134

Length

417 amino acids

Sequence
(BLAST)

001: MDRVSNLPDE VLCHILSFLT TKEAALTSIL AKRWRNLLAF VPSLTIDDSV FLHPEEAKQN RQDIIQSFMN FVDRVLALQG NSPLKEFSLK SFTVDDTDRV
101: DGWISNALAR GVSDLDLKII IRIKLSIGCG VDVTLAAGRI FLPMLKTLVL VWVKKLVLLR VIWKGRDVIV SSASVKTLIV TLGYWLNTLS FDTPSLVHFG
201: YSGSAAWDYP VVNMGNLVDT QIDFYLSQLN IKLLGAPGND EDVLPYSNAW KLFHGIRNVS HLSLFPDALE VLSMCSESLP VFNNLNSLAI RSDKDRRWQA
301: MPALLRNCPH LETLVIQGLV HHVTDKCGDV CDCISREDKG LSLKVCPVKV MEIYGFRGTM KEMAMIKHFL DYFPCLKEME VYAEENNNPT QLGGNQRVLE
401: MFKLYNKLSS CNVQLFI

Best Arabidopsis Sequence Match ( AT3G59000.1 )
(BLAST)

001: MDRVGSLPDE LLSHILSFLT TKEAALTSLL SKRWRYLIAF VPNLAFDDIV FLHPEEGKPE RDEIRQSFMD FVDRVLALQA ESPIKKFSLK CRIGVDSDRV
101: DGWISNVLNR GVSELDLLII LGMTMEDSYR LSPKGFASKT LVKLEIGCGI DISWVAGSIF LPMLKTLVLD SVWFYVDKFE TLLLALPALE ELVLVDVNWL
201: DSDVTISNAS LKTLTIDSDG HLGTFSFDTP SLVYFCYSDY AAEDYPVVKM ENLREARIFL LVTDNEIERV RLPINDGLED AMDNVVLRFG HVGKLMNGIR
301: NVEYLELSAD TLEVLSLCCE SMPVFKNLKS LAIKSTEGRG WQAMPVLLRN CPHLEFLLIE GLLHHVTDKC GDACDCVPRE DKGRSLTSCP VNMLEIHGFR
401: GTKKEMQMIK HFLDYFPSLK EMDIYADEDG PTNLEAPGMF EQITQLFTLY DEFYTCDVQF MVRGSLYKKL TAQCCVFKEE NLPHRLVRTL G

Arabidopsis Description

F-box protein At3g59000 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3N5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.