CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
extracellular 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98340	Canola	cytosol	31.91	44.29
CDX95484	Canola	cytosol	47.7	41.19
CDX67770	Canola	cytosol	51.97	40.31
CDX98338	Canola	cytosol	52.63	39.31
CDX98339	Canola	cytosol, extracellular	52.96	39.27
CDX98334	Canola	golgi, mitochondrion, plasma membrane	40.13	38.61
CDX67769	Canola	cytosol	52.63	38.37
CDX67768	Canola	cytosol	51.32	38.24
CDX98342	Canola	cytosol	48.68	37.56
CDY65605	Canola	cytosol	31.25	34.3
AT3G58820.1	Thale cress	cytosol	43.09	31.72
CDX67785	Canola	cytosol	19.08	30.21
CDY29185	Canola	cytosol	40.79	29.04
CDY58541	Canola	cytosol	40.79	27.13
CDY67935	Canola	cytosol	39.14	26.86
CDY34798	Canola	peroxisome	40.46	26.8
CDY65456	Canola	peroxisome	42.76	26.69
CDX84742	Canola	cytosol	39.47	26.37
CDX76838	Canola	cytosol	39.8	26.36
CDY49258	Canola	cytosol	41.12	26.21
CDY65604	Canola	cytosol	41.45	26.03
CDY00593	Canola	cytosol	30.26	24.93
CDY29195	Canola	cytosol	41.12	23.19
CDX67783	Canola	cytosol	32.57	23.18
CDY07824	Canola	cytosol	41.12	22.81
CDX98354	Canola	cytosol	31.91	22.77
CDY50412	Canola	cytosol, nucleus, peroxisome	32.89	22.57
CDX98355	Canola	cytosol	30.92	22.27
CDY29197	Canola	cytosol	41.78	22.09
CDX89484	Canola	cytosol	44.74	21.9
CDY29196	Canola	cytosol	39.47	21.82
CDX67782	Canola	cytosol	30.92	21.56
CDY07822	Canola	cytosol	41.78	21.45
CDY07837	Canola	cytosol	37.83	21.14
CDX98357	Canola	cytosol	24.01	21.1
CDX67788	Canola	cytosol	22.37	20.99
CDX98353	Canola	cytosol	29.28	20.41
CDX89015	Canola	cytosol	31.58	20.25
CDY33289	Canola	cytosol	32.24	19.37
CDY59410	Canola	cytosol	32.24	19.37
CDY57500	Canola	cytosol	29.28	18.78
CDY00610	Canola	mitochondrion	31.58	18.29
CDX71909	Canola	cytosol	30.59	18.2
CDY06017	Canola	nucleus	31.25	16.41
GSMUA_Achr2P13780_001	Banana	cytosol	19.41	14.36
CDX98352	Canola	cytosol, nucleus, plasma membrane	29.28	11.73
CDX67781	Canola	cytosol	29.61	11.49
CDX67786	Canola	cytosol	6.58	11.24
CDY06019	Canola	cytosol	30.26	10.62

Protein Annotations

EnsemblPlants:CDY18865	EnsemblPlantsGene:GSBRNA2T00006047001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:FBD	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	ProteinID:CDY18865	ProteinID:CDY18865.1	SEG:seg
SMART:SM00579	SUPFAM:SSF81383	UniParc:UPI0004EE9F07	UniProt:A0A078FWQ7	MapMan:35.1	:

Description

BnaC04g04850DBnaC04g04850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWQ7]

Coordinates

chrLK032090:+:25256..26752

Molecular Weight (calculated)

33607.9 Da

IEP (calculated)

6.030

GRAVY (calculated)

0.090

Length

304 amino acids

Sequence
(BLAST)

001: MDRVSNLPDE VLCHILSFLT SPRGGATFLH SSLLSPSTTT LCSSTPNMKL SLKCPTVADT ARVDVSSASL KTLTIKMLRY DFISTVSFDT PSLVRFKYTG
101: SPEPDFRVVV DMENLVDAHI FLYLCRCHVE EPESEYDHQV AATGYTNVQN LFHGIRNVLN LVLSPATLEV SGLSLGIDKG CGWQAMPALL GNCPRLETLV
201: IEGLIHDVTS MCGPSLGCCP VKVMKIHGFQ GTVKGMTMIK LFLDYLPCLE EMRVYVQEEN DSPATELEEN HGVSKRVLEM FQLYNKSSRS RCNVKLMVGD
301: VLCV

Best Arabidopsis Sequence Match ( AT1G52650.1 )
(BLAST)

001: MDHVSSLPEG VLCNIFSFLT TKEAALTSIL CKRWRNLLAF VPNLVIDDSV FLHPEEGKEE RYEIQQSFME FVDRVLALQG NSPIKKFSLK FRTDFASHRV
101: NAWISNVLAR GVSELDVLVI LYGAEFLPLS PKCFKSRNLV TLKINSLGID WLAGDIFLPM LKTLVLHSVK LCVDKFFFRA LPALEELVLF AVSWRDRDVT
201: VSNASIKTLT IKFNYYLGTL SLDTPSLVSF CFSDHVAKDY PLAKMEKLSE ARISLLVTEY QIERARAPNI YWVEDDVVLR LVNVGKLMKG IRNVQYLNLS
301: PNTLEVLSKC CESMPLFNNL KSLTIESNER RGWQAMPVLL RNCPHLETLV LEGLLHHVTE KCRNACDCVS QEEKGRSLTS CQVKVLEIKG FQGTTKEMHT
401: IKHFLEHFPC LREIKIHMEE NGPTQLRVPE VSQYIAEMME HYEKSSSCNV QLLVGGYLCK KWTTQ

Arabidopsis Description

F-box/LRR-repeat protein At1g52650 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.