CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67781	Canola	cytosol	91.96	89.14
CDY57500	Canola	cytosol	37.42	59.92
CDY06017	Canola	nucleus	41.9	54.92
AT3G59200.1	Thale cress	cytosol	35.44	51.73
CDX67785	Canola	cytosol	11.86	46.88
CDX67782	Canola	cytosol	26.09	45.41
CDX67783	Canola	cytosol	24.51	43.56
CDX98354	Canola	cytosol	24.37	43.43
CDX98353	Canola	cytosol	24.9	43.35
CDX98355	Canola	cytosol	23.19	41.71
CDX71909	Canola	cytosol	27.27	40.51
CDX67788	Canola	cytosol	16.86	39.51
CDX98357	Canola	cytosol	17.26	37.86
CDX98340	Canola	cytosol	10.41	36.07
CDX98334	Canola	golgi, mitochondrion, plasma membrane	14.36	34.49
CDY65605	Canola	cytosol	12.12	33.21
CDX67786	Canola	cytosol	7.51	32.02
CDY33289	Canola	cytosol	21.34	32.02
CDY29185	Canola	cytosol	17.92	31.85
CDY59410	Canola	cytosol	21.21	31.82
CDY49258	Canola	cytosol	19.89	31.66
CDY67935	Canola	cytosol	18.45	31.6
CDY00593	Canola	cytosol	15.15	31.17
CDY58541	Canola	cytosol	18.71	31.07
CDX67768	Canola	cytosol	16.6	30.88
CDY65604	Canola	cytosol	19.5	30.58
CDX98338	Canola	cytosol	16.34	30.47
CDX95484	Canola	cytosol	14.1	30.4
CDX84742	Canola	cytosol	18.05	30.11
CDY65456	Canola	peroxisome	19.1	29.77
CDY34798	Canola	peroxisome	17.92	29.63
CDX98339	Canola	cytosol, extracellular	15.94	29.51
CDY18865	Canola	plastid	11.73	29.28
CDX76838	Canola	cytosol	17.65	29.19
CDX98342	Canola	cytosol	15.15	29.19
CDX67769	Canola	cytosol	15.94	29.02
CDY00610	Canola	mitochondrion	19.76	28.57
CDY06019	Canola	cytosol	32.54	28.52
CDX89015	Canola	cytosol	17.79	28.48
CDX67770	Canola	cytosol	14.49	28.06
CDY29195	Canola	cytosol	18.58	26.16
CDY50412	Canola	cytosol, nucleus, peroxisome	15.02	25.73
CDY07837	Canola	cytosol	18.05	25.18
CDY07822	Canola	cytosol	19.63	25.17
CDY29197	Canola	cytosol	18.97	25.04
CDY07824	Canola	cytosol	18.05	25.0
CDY29196	Canola	cytosol	17.39	24.0
CDX89484	Canola	cytosol	18.31	22.38
GSMUA_Achr2P13780_001	Banana	cytosol	8.96	16.55

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:A0A078EBG4	EnsemblPlants:CDX98352	ProteinID:CDX98352	ProteinID:CDX98352.1
InterPro:FBD	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00105906001	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF07723
ScanProsite:PS00194	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	InterPro:Thioredoxin_CS
UniParc:UPI0004EF4209	SEG:seg	:	:	:	:

Description

BnaC06g17130D

Coordinates

chrLK031904:+:767211..772324

Molecular Weight (calculated)

85571.7 Da

IEP (calculated)

4.736

GRAVY (calculated)

-0.044

Length

759 amino acids

Sequence
(BLAST)

001: MSKTLVKLKL AGTDEFIIDV REVSLPKLKT LHMNDVSFAD ESGAAFGKLV SGCHVLEELV MVKMTWDFCG ACSVSNPTLK RLIIYCEYDE ENPESVSLDT
101: PSLVYLELTD TVAAKYPKMN LDSLVEASVG IRMTPGQVFR GRDLVNRHYG YKLRKDVSAT DFLMGISHVK ILYLSSQALE VLTFCCKEIP VFNNLIHLTI
201: ETDQDVDWES LPNLLKNCPN LETLVFQGLH YGDTNQCFDE GYRFKDTNEC FVKGADRCVC KPWLGTPSWL SSSPVKKLKV LKFGEITTYK DDMDKQSDLI
301: NHFVETMPNL EEVVLYYDTP FDSDLEVVSN GFQQLEKVAS TRCKIQVVSD NISFSTTVHS TSATSGLVFF KNTFPTSAFR FVFLHQSLAV SASHTRGRRS
401: GSDRIFRYFG IRYPLPHEIL VSKTLVSADV EDVFLPKLKI LDIDSVVFEE EGVGFARLLS GCPVLEELVL TNMGWENWEF CSVSVTTLKR LTIFLDDFDE
501: NPMSVSFDTP NLEYLEYSDN IAREYPKVNF SSLVEAHIGL RLSEDQKYEE EKEMVGNATN FLLGLCNVQI LYLSAKTLEV CTFCCEATPV FNNLIQLTIE
601: SNDESGWDSL PALLPNCSNL ETLIFKGLVH KSTDVCGNMC LCKPLKNPSC LSSSAVKVLK IILSVDIDDE GMEMEQIMHF LEKMPRLEQL VVYFNISYDP
701: SVFDLSKKLQ SIPRIASPKC NFQVISPNLS LSSTLPSTLS KKWSAPPNEE YSWFLKALT

Best Arabidopsis Sequence Match ( AT3G59190.2 )
(BLAST)

001: MSSKRMDSGS KDIISNLPDA LLCHVLSFLP TTEAASTSVL AKRWRFLLAF VPNLDLDNMI YDRPKMGRRK RLELRKSFKL FVDRVMALQG NAPLKKFSLR
101: CKIGSDPSRV NGWVLKVLDR GVEELDLYIA SEYEYPLPPK VLMTKTLVSL KVSGTDEFTI DVGEFFLPKL KTLHLSAISF GDEGGPPFAK LISACHALEE
201: LVMIKMMWDY WEFCSVSSPS LKRVSIDCEN IDENPKSVSF DTPNLVYLEF TDTVAVKYPK VNFDSLVEAS IGLRMTPDQV FDARDLVNRH HGYKRCKGAN
301: AADFMMGVCN VKTMYLSSEA LEVLTFCCKK AIPVFNNLIH LTVETDERVD WESLPILLKN CPNLETLIFE GLHYGDLNQC FDKDYSFKDT NECYGDQGDT
401: CQCKPWYGTP VWLSSSPVKI LKVLKFGQIS SYKDDMERQT DLIEHFLESM PNLEQVILFY DTTYDDDLKI VSTQLQMLEK VASPKCKIQV ISDNISYSFT
501: VYSSSSTKGL NFFKDTFPV

Arabidopsis Description

F-box/RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.