CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67769	Canola	cytosol	82.8	80.82
CDX98339	Canola	cytosol, extracellular	73.96	73.41
CDX67768	Canola	cytosol	71.74	71.57
CDX98342	Canola	cytosol	69.04	71.32
CDX67770	Canola	cytosol	67.81	70.41
CDX98334	Canola	golgi, mitochondrion, plasma membrane	53.07	68.35
CDX95484	Canola	cytosol	56.27	65.06
CDX98340	Canola	cytosol	34.64	64.38
AT3G58820.1	Thale cress	cytosol	60.44	59.56
CDY18865	Canola	plastid	39.31	52.63
CDY29185	Canola	cytosol	50.86	48.48
CDX84742	Canola	cytosol	50.86	45.49
CDY58541	Canola	cytosol	50.86	45.3
CDY49258	Canola	cytosol	52.58	44.86
CDY00593	Canola	cytosol	40.54	44.72
CDY65604	Canola	cytosol	52.09	43.8
CDY67935	Canola	cytosol	47.42	43.57
CDY65456	Canola	peroxisome	51.84	43.33
CDY65605	Canola	cytosol	29.48	43.32
CDY34798	Canola	peroxisome	48.65	43.14
CDX76838	Canola	cytosol	48.16	42.7
CDY50412	Canola	cytosol, nucleus, peroxisome	44.47	40.86
CDY29195	Canola	cytosol	51.11	38.59
CDY07824	Canola	cytosol	47.67	35.4
CDY29196	Canola	cytosol	47.67	35.27
CDX89484	Canola	cytosol	53.07	34.78
CDY29197	Canola	cytosol	48.4	34.26
CDX67782	Canola	cytosol	36.36	33.95
CDX67786	Canola	cytosol	14.5	33.15
CDX67785	Canola	cytosol	15.48	32.81
CDX98353	Canola	cytosol	35.14	32.8
CDX67783	Canola	cytosol	34.4	32.79
CDX98355	Canola	cytosol	33.91	32.7
CDX98354	Canola	cytosol	34.15	32.63
CDY07822	Canola	cytosol	46.44	31.93
CDY07837	Canola	cytosol	40.54	30.33
CDY59410	Canola	cytosol	37.59	30.24
CDY33289	Canola	cytosol	37.35	30.04
CDX89015	Canola	cytosol	34.4	29.54
CDY57500	Canola	cytosol	34.15	29.32
CDX71909	Canola	cytosol	36.12	28.77
CDX67788	Canola	cytosol	22.85	28.7
CDX98357	Canola	cytosol	23.59	27.75
CDY00610	Canola	mitochondrion	34.89	27.05
CDY06017	Canola	nucleus	37.35	26.25
GSMUA_Achr2P13780_001	Banana	cytosol	22.11	21.9
CDY06019	Canola	cytosol	36.12	16.97
CDX98352	Canola	cytosol, nucleus, plasma membrane	30.47	16.34
CDX67781	Canola	cytosol	30.96	16.09

Protein Annotations

EnsemblPlants:CDX98338	EnsemblPlantsGene:GSBRNA2T00105886001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	PFAM:PF00646	PFscan:PS50181	ProteinID:CDX98338	ProteinID:CDX98338.1
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE7129	MapMan:35.1	:

Description

BnaC06g16990D

Coordinates

chrLK031904:-:655498..657046

Molecular Weight (calculated)

46267.1 Da

IEP (calculated)

5.141

GRAVY (calculated)

0.098

Length

407 amino acids

Sequence
(BLAST)

001: MDRVSNLPDE VRCHILSFLT TKEAALTSIL AKRWRNLLSF VACITIDDDF VFLHPEEGKK DRQDIIQSFM NFVDRVLALQ GNSPLKGFSL KCFTVADTDR
101: VDGWISNVLA RGVSDLDLQI IIRSDKWIFY PMSPKCFECS TLVCPNEFET LLHALPALEE LVLVRVIWKD RDVIVSSASV KTLTVNLGFW LNTLSFDTPS
201: LVHFEYSGSA AWDYPVVNMG NLVDTQIDFY LIALGYSNVW KLFHGIRNAP HLSLFPDALE VLSMCSESLP VFNNLNSLAI RSDKDRGWQA MPALLRNCPH
301: LETLVIKGPV HRVTDKCGDV CDCISREDKG LSLTLCPVKV IEIYGFQGTM KEMAMIKHFL DYFPSLKEME VYAEENIYPT QLGGNQRVLE MFELYNKFSS
401: CNVQLFI

Best Arabidopsis Sequence Match ( AT3G59000.1 )
(BLAST)

001: MDRVGSLPDE LLSHILSFLT TKEAALTSLL SKRWRYLIAF VPNLAFDDIV FLHPEEGKPE RDEIRQSFMD FVDRVLALQA ESPIKKFSLK CRIGVDSDRV
101: DGWISNVLNR GVSELDLLII LGMTMEDSYR LSPKGFASKT LVKLEIGCGI DISWVAGSIF LPMLKTLVLD SVWFYVDKFE TLLLALPALE ELVLVDVNWL
201: DSDVTISNAS LKTLTIDSDG HLGTFSFDTP SLVYFCYSDY AAEDYPVVKM ENLREARIFL LVTDNEIERV RLPINDGLED AMDNVVLRFG HVGKLMNGIR
301: NVEYLELSAD TLEVLSLCCE SMPVFKNLKS LAIKSTEGRG WQAMPVLLRN CPHLEFLLIE GLLHHVTDKC GDACDCVPRE DKGRSLTSCP VNMLEIHGFR
401: GTKKEMQMIK HFLDYFPSLK EMDIYADEDG PTNLEAPGMF EQITQLFTLY DEFYTCDVQF MVRGSLYKKL TAQCCVFKEE NLPHRLVRTL G

Arabidopsis Description

F-box protein At3g59000 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3N5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.