CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29195	Canola	cytosol	77.01	78.29
CDY29197	Canola	cytosol	81.93	78.09
CDY29196	Canola	cytosol	78.28	78.0
CDY29185	Canola	cytosol	59.85	76.81
CDY07837	Canola	cytosol	75.0	75.55
CDY07822	Canola	cytosol	79.74	73.82
AT3G58890.1	Thale cress	extracellular	30.11	56.31
AT3G58950.1	Thale cress	cytosol	41.61	54.68
CDY49258	Canola	cytosol	44.16	50.73
CDY65604	Canola	cytosol	44.34	50.21
CDX98342	Canola	cytosol	35.22	48.98
CDY65605	Canola	cytosol	24.64	48.74
CDX98340	Canola	cytosol	19.34	48.4
CDX98338	Canola	cytosol	35.4	47.67
CDX98339	Canola	cytosol, extracellular	35.4	47.32
CDX67769	Canola	cytosol	35.95	47.24
CDX67770	Canola	cytosol	33.03	46.17
CDX84742	Canola	cytosol	37.59	45.27
CDX76838	Canola	cytosol	37.59	44.88
CDY58541	Canola	cytosol	37.23	44.64
CDX67768	Canola	cytosol	33.03	44.36
CDY34798	Canola	peroxisome	37.04	44.23
CDY65456	Canola	peroxisome	37.96	42.71
CDY00593	Canola	cytosol	28.47	42.28
CDY18865	Canola	plastid	22.81	41.12
CDX98334	Canola	golgi, mitochondrion, plasma membrane	23.54	40.82
CDY67935	Canola	cytosol	32.85	40.63
CDX95484	Canola	cytosol	25.91	40.34
CDY50412	Canola	cytosol, nucleus, peroxisome	32.12	39.73
CDX67785	Canola	cytosol	12.41	35.42
CDX89484	Canola	cytosol	39.6	34.94
CDX67783	Canola	cytosol	25.91	33.26
CDX98355	Canola	cytosol	25.36	32.94
CDX98353	Canola	cytosol	25.91	32.57
CDX67782	Canola	cytosol	25.73	32.34
CDX98354	Canola	cytosol	25.0	32.16
CDY57500	Canola	cytosol	26.64	30.8
CDY33289	Canola	cytosol	28.1	30.43
CDY59410	Canola	cytosol	28.1	30.43
CDX98357	Canola	cytosol	18.25	28.9
CDX67788	Canola	cytosol	16.97	28.7
CDX89015	Canola	cytosol	24.45	28.27
CDY06017	Canola	nucleus	29.74	28.15
CDX71909	Canola	cytosol	25.91	27.79
CDX67786	Canola	cytosol	8.76	26.97
CDY00610	Canola	mitochondrion	25.55	26.67
GSMUA_Achr2P13780_001	Banana	cytosol	13.87	18.49
CDX98352	Canola	cytosol, nucleus, plasma membrane	25.0	18.05
CDX67781	Canola	cytosol	24.82	17.37
CDY06019	Canola	cytosol	25.73	16.28

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078F442	EnsemblPlants:CDY07824	ProteinID:CDY07824	ProteinID:CDY07824.1
ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00124970001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EF1EF3	SEG:seg	:	:	:	:

Description

BnaC03g47980DBnaC03g47980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F442]

Coordinates

chrLK031981:+:241655..243823

Molecular Weight (calculated)

62409.2 Da

IEP (calculated)

4.634

GRAVY (calculated)

-0.369

Length

548 amino acids

Sequence
(BLAST)

001: MDRIGSLPDD VICHILSFLT TKEAAFTSIL SKRWRNLFTL VPNLDIDDSV FLIPEEGKRE RDGILQSFMD FVERVLASQG DTPIKKFSLK CKTGIDTDRV
101: NLWICADTFL PMLKTLTFES TWWPEMDESV SSQSLRKLTI YAGGFRDFRN PKSISFDTPN LVYLEYSDYV AADYPKLTGH DIELIRAPND EDDVSLRLGN
201: VWKLISGLRN VQRLFISADT LEVLSLCCES MPVFNNLKFL GIISAEDLGW QAMPVLLRNC PHLETLILKG LLHYVTDKCG DVCDCISRED KGRSLLSCPV
301: KKLEIREFQG TVREKEMIRH FLDSFPCLDD MEVYADQNGN DPTDVEVNRI CKIVAYKVHA EEVSTETVVE SKSMSQTQME EISSQSFSWF LQFPRNNRNK
401: YNFVYILHGA PPPPPPQEMS QDYLKEQLDA AKTKLAELNE EYKERQRVHD AMFDRIVEQN PMIASALKAR QSATEGSEAS NDQEKKRDFK ALFEIIAELN
501: PDLASVLRAR RGTDLEGGET SRDQGEMTEL DQITSEAVAA YVLPQDGH

Best Arabidopsis Sequence Match ( AT3G58950.1 )
(BLAST)

001: MDLFSSLPDE VLCHILSFLT TKEAALASVV SKRWRNQFAL VPNLDIDEEG KREREEILLS FMDFVDNVLA LQADSPIKKF SLKCKTGVHP RRLDAWARLG
101: PVLPMLKTLI IDSAWIRCDT IETFLPTFPV LEELSMSINE WPDWDETVTS ASLRKLSIFT IGCENFSNPK SISFDIPSLV YFEYYDMVAE DYPKVNLTSV
201: VEARISLLLD QDQIKRGRAP NNDEDDVLLR LRNGWKLMSG IRNVQKLYIS LDTLQVLSLC CKSMPVFNNL KLLSVKTAEN EGWEGMPVLL RNCPHLETLV
301: FEGLRHFVTN KCGDACDYVS REDKGRSLVS CPVKKLQIKG FRGTIRELEM IKHFLYSFRC LEKVEIYAEE KGRTRTDLEV PGMFELIARM LRLYNEFYSC
401: DVQFLVRSSL DKKWTAQ

Arabidopsis Description

Putative F-box protein At3g58950 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.