Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • nucleus 1
  • peroxisome 2
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:peroxisome
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY01389
CDY29370
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G58930.1 CDY01389 AT2G25700.1 21798944
AT3G58930.1 CDY29370 AT2G25700.1 21798944
AT3G58930.1 CDY43408 AT2G25700.1 21798944
AT3G58930.1 CDY44209 AT2G25700.1 21798944
AT3G58930.1 CDY63159 AT2G25700.1 21798944
AT3G58930.1 CDY67544 AT2G25700.1 21798944
AT3G58930.1 CDY68971 AT2G25700.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX84742 Canola cytosol 91.17 97.58
CDX76838 Canola cytosol 81.52 86.49
CDY34798 Canola peroxisome 80.7 85.62
AT3G58930.1 Thale cress cytosol 64.48 65.15
CDY49258 Canola cytosol 52.98 54.09
CDX89484 Canola cytosol 68.79 53.95
CDY58541 Canola cytosol 49.69 52.95
CDY65604 Canola cytosol 52.57 52.89
CDX98338 Canola cytosol 43.33 51.84
CDX98340 Canola cytosol 23.2 51.6
CDX95484 Canola cytosol 36.76 50.85
CDX67770 Canola cytosol 40.86 50.77
CDX67768 Canola cytosol 41.89 50.0
CDX98339 Canola cytosol, extracellular 42.09 50.0
CDY29185 Canola cytosol 43.74 49.88
CDX67769 Canola cytosol 42.51 49.64
CDY65605 Canola cytosol 28.13 49.46
CDX98342 Canola cytosol 39.43 48.73
CDY00593 Canola cytosol 35.93 47.43
CDX98334 Canola golgi, mitochondrion, plasma membrane 30.18 46.52
AT3G58940.1 Thale cress cytosol 58.93 46.44
CDY67935 Canola cytosol 41.89 46.05
CDY50412 Canola cytosol, nucleus, peroxisome 41.68 45.82
CDY18865 Canola plastid 26.69 42.76
CDY29195 Canola cytosol 42.71 38.59
CDY29197 Canola cytosol 44.97 38.09
CDY07824 Canola cytosol 42.71 37.96
CDX67783 Canola cytosol 33.26 37.94
CDY29196 Canola cytosol 42.71 37.82
CDX98353 Canola cytosol 33.68 37.61
CDX98355 Canola cytosol 32.44 37.44
CDX98354 Canola cytosol 32.65 37.32
CDX67786 Canola cytosol 13.55 37.08
CDX67782 Canola cytosol 33.06 36.93
CDY07822 Canola cytosol 44.15 36.32
CDY07837 Canola cytosol 39.63 35.48
CDY57500 Canola cytosol 34.29 35.23
CDX67785 Canola cytosol 13.76 34.9
CDY59410 Canola cytosol 34.91 33.6
CDY33289 Canola cytosol 34.7 33.4
CDX71909 Canola cytosol 33.47 31.9
CDX98357 Canola cytosol 21.97 30.92
CDX89015 Canola cytosol 29.77 30.59
CDY06017 Canola nucleus 36.34 30.57
CDX67788 Canola cytosol 20.33 30.56
CDY00610 Canola mitochondrion 29.77 27.62
GSMUA_Achr2P13780_001 Banana cytosol 19.71 23.36
CDX98352 Canola cytosol, nucleus, plasma membrane 29.77 19.1
CDX67781 Canola cytosol 30.39 18.9
CDY06019 Canola cytosol 33.26 18.71
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1UniProt:A0A078JI75EnsemblPlants:CDY65456ProteinID:CDY65456ProteinID:CDY65456.1
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:FBDGO:GO:0003674GO:GO:0005488GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00046633001InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfPFAM:PF00646PFscan:PS50181
PANTHER:PTHR31639PANTHER:PTHR31639:SF6SMART:SM00256SMART:SM00579SUPFAM:SSF52047SUPFAM:SSF81383
UniParc:UPI0004EED3A9SEG:seg::::
Description
BnaC03g71940DBnaC03g71940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JI75]
Coordinates
chrLK034796:+:7496..9518
Molecular Weight (calculated)
55408.6 Da
IEP (calculated)
4.784
GRAVY (calculated)
-0.123
Length
487 amino acids
Sequence
(BLAST)
001: MDRLTSLPDE LLYHILSLLP TKSAVVTSAL SKRWLNLWKL NPNLDIDDSV FIHAEDGKGK REEIRQSFVG FVDRVLAMQG DSPINSFSLK CITGIHPDTV
101: NRWICNVLKR GVSDLSLFTD FTCEDTEEDS YQLPRELFFS STLVKLKLRS EHCVDWWWHL NSSSLTMLKS LDIDSDLIFC GEIEEFIPSF PALEELRMAS
201: MEWLEPDVTV SSATLRKLTL HGTGCEEFVN PTSVSFDTPN LLVLSYFDLV AEDYPLVNMS KLVHAVINLI VTDKQVKRLR EANNELLEDD DDDDVVLHFG
301: NVVKLMNGIQ NVQILSFTAD TLEVLSQCCD TLPVFNNLKF LGITSEEGRG WQAMPALLKN CPRLETIILR GLSHYVTDKC GDACPCISRE DKGSSLRSCP
401: VNRIEIQGFR ATMKEMTLIK HFLDYFPSLK RLDAVVEDNE PTQLRNPELS KCVTEMFGLY NKLHPSCSVE LMVSPFLQKK WREQGHI
Best Arabidopsis Sequence Match ( AT3G58930.5 )
(BLAST)
001: MDRVSNLPDG VRGHILSFLP AKHIALTSVL SKSWLNLWKL IPILDIDDSE FLHPEEGKAE RLEIRQSFVD FVDRVLALQD DSPIDRFSLK CITGIHPDHV
101: NRWICNVLQR GVSDLDLFID FSYEDTQEDE DMLPQEMFVS KTLVKLKIRN DRCVDWWCGK GGTSLPMLKS LYIDSDLILW GKMKRFLSSF PVLEELRMAS
201: MEWKESHETV SSASLRKLSI LGTGCEDYVN PKSISFDTPS LLYLNYSDLV AEDYPLVNMG KLLEARINLI VKDDQIKRVR EPNNDLLQDD AGNVVLQFGN
301: VVKLMNGIQN IQILYLTADT LEVLSLCCES MPVFNNLKTL GIKSEEGRGW QAVPALLRNC PHLEYLIIEG LLHNVTDKCG DACDCISRED KGRSLASCPV
401: KKVEIQGFRG TMREINMIGH FLRSFKCLKE MGIFPEEEGP TNFENPGAFE YVEKILKLYN EISNCDVYFL VWGYMRRKWT TQ
Arabidopsis Description
F-box/LRR-repeat protein At3g58930 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXW6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.