CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67788	Canola	cytosol	35.03	55.25
CDX98357	Canola	cytosol	37.38	55.2
CDX67782	Canola	cytosol	46.18	54.13
CDX67785	Canola	cytosol	19.96	53.12
CDY06019	Canola	cytosol	89.43	52.77
CDX98354	Canola	cytosol	43.64	52.35
CDX98353	Canola	cytosol	44.62	52.29
CDX67783	Canola	cytosol	43.64	52.22
CDX98355	Canola	cytosol	42.86	51.9
CDY57500	Canola	cytosol	44.62	48.1
CDX67786	Canola	cytosol	16.44	47.19
CDY06017	Canola	nucleus	47.36	41.8
CDY33289	Canola	cytosol	36.99	37.35
CDY59410	Canola	cytosol	36.79	37.15
CDX67768	Canola	cytosol	29.55	37.01
CDX98342	Canola	cytosol	28.38	36.8
CDY00593	Canola	cytosol	26.42	36.59
CDY58541	Canola	cytosol	32.49	36.32
CDX98338	Canola	cytosol	28.77	36.12
CDX98339	Canola	cytosol, extracellular	28.77	35.85
CDX67770	Canola	cytosol	27.4	35.71
CDY49258	Canola	cytosol	33.07	35.43
CDX67769	Canola	cytosol	28.77	35.25
CDY29185	Canola	cytosol	29.35	35.13
CDY65604	Canola	cytosol	32.88	34.71
CDY67935	Canola	cytosol	29.94	34.54
CDX84742	Canola	cytosol	30.53	34.29
CDY50412	Canola	cytosol, nucleus, peroxisome	29.35	33.86
CDY65456	Canola	peroxisome	31.9	33.47
CDX76838	Canola	cytosol	29.75	33.12
CDY34798	Canola	peroxisome	29.75	33.12
CDX95484	Canola	cytosol	22.7	32.95
CDX89015	Canola	cytosol	30.53	32.91
CDX98334	Canola	golgi, mitochondrion, plasma membrane	20.35	32.91
CDY65605	Canola	cytosol	17.61	32.49
CDX98340	Canola	cytosol	13.31	31.05
AT1G56610.1	Thale cress	endoplasmic reticulum	32.09	30.65
CDY18865	Canola	plastid	18.2	30.59
CDY00610	Canola	mitochondrion	30.33	29.52
CDY29195	Canola	cytosol	29.16	27.64
CDX98352	Canola	cytosol, nucleus, plasma membrane	40.51	27.27
CDX67781	Canola	cytosol	41.29	26.95
CDX89484	Canola	cytosol	32.09	26.41
CDY29197	Canola	cytosol	29.55	26.26
CDY07822	Canola	cytosol	30.14	26.01
CDY07824	Canola	cytosol	27.79	25.91
CDY29196	Canola	cytosol	26.42	24.55
CDY07837	Canola	cytosol	26.03	24.45
GSMUA_Achr2P13780_001	Banana	cytosol	18.59	23.11

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX71909	ProteinID:CDX71909	ProteinID:CDX71909.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00155652001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE18C6
SEG:seg	:	:	:	:	:

Description

BnaC08g29650D

Coordinates

chrLK031795:-:1191430..1193196

Molecular Weight (calculated)

58027.6 Da

IEP (calculated)

6.610

GRAVY (calculated)

0.045

Length

511 amino acids

Sequence
(BLAST)

001: MQSVCPKFLT PCVVFVQVDP VDMSSKRLNL GSKDFISSLP DCLICHILSF VSTKEAASTS VLAKRWRYLF ALTPNLEFND SIYLNSEIAN QRKSTFPWIT
101: RKKSKTPRSF VDFVDRVLVL HQNVPLNRFS LKCEDVVHPA IIISWLLKVM DRGVLDLDLH ISSEMGYRLP SEMFCSETLV RLKLGIRDVL TITTEKSVSL
201: PKVKTLCLDY IMVENSVFAK LLSGCHALEE LVLNNLFEVK GSCSVFHNTL KRLVVSRSRT FDENHESVSF STPNLVYLEH SDTIANMYPK VEFNSLVEAS
301: LNLRMTSDQI MVGNATNFLM GICNVKILHL SYNTLQVLTY CCKPIPQFNN LIHLTIQSDP EVAWESLPAL LKNCPKLETL VFEGLHHKFK NCGEEDKCLC
401: KPWEGEDIPT CLSSSPVKVL KILKFGEIFG DEDIEEQIKQ VQHFLETMPN LEQLILYYDT SFDEDVYEVS AQLQWHPRVA SSKCKISVIS DSLCLSSTVP
501: CSVVSKWGRL L

Best Arabidopsis Sequence Match ( AT3G59190.2 )
(BLAST)

001: MSSKRMDSGS KDIISNLPDA LLCHVLSFLP TTEAASTSVL AKRWRFLLAF VPNLDLDNMI YDRPKMGRRK RLELRKSFKL FVDRVMALQG NAPLKKFSLR
101: CKIGSDPSRV NGWVLKVLDR GVEELDLYIA SEYEYPLPPK VLMTKTLVSL KVSGTDEFTI DVGEFFLPKL KTLHLSAISF GDEGGPPFAK LISACHALEE
201: LVMIKMMWDY WEFCSVSSPS LKRVSIDCEN IDENPKSVSF DTPNLVYLEF TDTVAVKYPK VNFDSLVEAS IGLRMTPDQV FDARDLVNRH HGYKRCKGAN
301: AADFMMGVCN VKTMYLSSEA LEVLTFCCKK AIPVFNNLIH LTVETDERVD WESLPILLKN CPNLETLIFE GLHYGDLNQC FDKDYSFKDT NECYGDQGDT
401: CQCKPWYGTP VWLSSSPVKI LKVLKFGQIS SYKDDMERQT DLIEHFLESM PNLEQVILFY DTTYDDDLKI VSTQLQMLEK VASPKCKIQV ISDNISYSFT
501: VYSSSSTKGL NFFKDTFPV

Arabidopsis Description

F-box/RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.