CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi

Predictor Summary:

plastid 1
mitochondrion 3
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98340	Canola	cytosol	44.3	63.93
CDX98338	Canola	cytosol	68.35	53.07
CDX98342	Canola	cytosol	65.82	52.79
CDX67769	Canola	cytosol	69.62	52.76
CDX95484	Canola	cytosol	57.91	51.99
CDX67768	Canola	cytosol	63.29	49.02
CDX98339	Canola	cytosol, extracellular	63.29	48.78
CDX67770	Canola	cytosol	57.91	46.68
CDY65605	Canola	cytosol	37.97	43.32
CDY18865	Canola	plastid	38.61	40.13
AT3G58820.1	Thale cress	cytosol	49.37	37.77
CDX67785	Canola	cytosol	20.57	33.85
CDY58541	Canola	cytosol	46.52	32.17
CDY29185	Canola	cytosol	42.72	31.62
CDX84742	Canola	cytosol	44.62	30.99
CDY67935	Canola	cytosol	42.72	30.47
CDY34798	Canola	peroxisome	43.99	30.28
CDY65456	Canola	peroxisome	46.52	30.18
CDY49258	Canola	cytosol	45.25	29.98
CDY65604	Canola	cytosol	45.57	29.75
CDX76838	Canola	cytosol	42.72	29.41
CDY00593	Canola	cytosol	33.86	29.0
CDX67782	Canola	cytosol	37.03	26.83
CDY50412	Canola	cytosol, nucleus, peroxisome	36.08	25.73
CDX98355	Canola	cytosol	33.23	24.88
CDY29195	Canola	cytosol	42.41	24.86
CDX98354	Canola	cytosol	33.23	24.65
CDX67783	Canola	cytosol	33.23	24.59
CDX89484	Canola	cytosol	47.78	24.32
CDY07824	Canola	cytosol	40.82	23.54
CDY07837	Canola	cytosol	40.19	23.35
CDX98353	Canola	cytosol	31.96	23.17
CDY29197	Canola	cytosol	42.09	23.13
CDX67788	Canola	cytosol	23.42	22.84
CDY29196	Canola	cytosol	39.24	22.55
CDY07822	Canola	cytosol	41.77	22.3
CDX98357	Canola	cytosol	23.42	21.39
CDY59410	Canola	cytosol	33.54	20.95
CDY33289	Canola	cytosol	33.23	20.75
CDX71909	Canola	cytosol	32.91	20.35
CDY57500	Canola	cytosol	30.38	20.25
CDY06017	Canola	nucleus	34.81	19.0
CDX89015	Canola	cytosol	28.16	18.78
CDY00610	Canola	mitochondrion	29.11	17.52
CDX98352	Canola	cytosol, nucleus, plasma membrane	34.49	14.36
GSMUA_Achr2P13780_001	Banana	cytosol	18.35	14.11
CDX67781	Canola	cytosol	34.81	14.05
CDX67786	Canola	cytosol	7.28	12.92
CDY06019	Canola	cytosol	32.59	11.89

Protein Annotations

EnsemblPlants:CDX98334	EnsemblPlantsGene:GSBRNA2T00105880001	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	PFAM:PF08387	ProteinID:CDX98334	ProteinID:CDX98334.1	SEG:seg
SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI0004EDB27C	MapMan:35.1	:	:

Description

BnaC06g16950D

Coordinates

chrLK031904:-:634577..636580

Molecular Weight (calculated)

35707.7 Da

IEP (calculated)

7.425

GRAVY (calculated)

0.084

Length

316 amino acids

Sequence
(BLAST)

001: MPDLYRQVRR SPRRKGPRRL HVLARGVSDL DLNIIPGDYY QLKINYGIGV GWVAGRVFLP LLKTLILDTV PELVLTHVVW KGMDVTVSSA SLKTLTINSI
101: FVFNALSFDT PSLLHFECSG FVASDYPLVN MGNLVDAQID FFLSLVIRNV WNFFHGLRNA PNLDLFPDTL EVLSMCSESM PVFNNLKSLA IESHKSRGWQ
201: AMPALLRNCP NLETLGLVHR VTDKCGDVCC CISREDKGLS LTLCPVKVMK VHGFEGTMEE MAMIKHFLDY FPCLKEMEVY AAEENNNPTR VGGNQRVLEM
301: FELYNKLSSC NVQLRI

Best Arabidopsis Sequence Match ( AT3G59000.1 )
(BLAST)

001: MDRVGSLPDE LLSHILSFLT TKEAALTSLL SKRWRYLIAF VPNLAFDDIV FLHPEEGKPE RDEIRQSFMD FVDRVLALQA ESPIKKFSLK CRIGVDSDRV
101: DGWISNVLNR GVSELDLLII LGMTMEDSYR LSPKGFASKT LVKLEIGCGI DISWVAGSIF LPMLKTLVLD SVWFYVDKFE TLLLALPALE ELVLVDVNWL
201: DSDVTISNAS LKTLTIDSDG HLGTFSFDTP SLVYFCYSDY AAEDYPVVKM ENLREARIFL LVTDNEIERV RLPINDGLED AMDNVVLRFG HVGKLMNGIR
301: NVEYLELSAD TLEVLSLCCE SMPVFKNLKS LAIKSTEGRG WQAMPVLLRN CPHLEFLLIE GLLHHVTDKC GDACDCVPRE DKGRSLTSCP VNMLEIHGFR
401: GTKKEMQMIK HFLDYFPSLK EMDIYADEDG PTNLEAPGMF EQITQLFTLY DEFYTCDVQF MVRGSLYKKL TAQCCVFKEE NLPHRLVRTL G

Arabidopsis Description

F-box protein At3g59000 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3N5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.