Factsheet for GSMUA_Achr2P13780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59150.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT3G59150.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT3G59150.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT3G59150.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT3G59150.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT3G59150.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT3G59150.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT3G59150.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT3G59150.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT3G59150.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT3G59150.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67786	Canola	cytosol	12.41	28.65
AT5G38392.1	Thale cress	cytosol	12.9	24.42
AT3G58910.1	Thale cress	cytosol, nucleus, peroxisome	12.65	24.3
VIT_19s0093g00430.t01	Wine grape	cytosol, peroxisome, plastid	21.65	23.99
CDX98340	Canola	cytosol	12.41	23.29
Solyc07g064260.2.1	Tomato	extracellular	21.41	22.92
Bra024503.1-P	Field mustard	cytosol	18.49	22.69
CDX67768	Canola	cytosol	22.38	22.55
CDX98339	Canola	cytosol, extracellular	22.38	22.44
CDX98355	Canola	cytosol	22.87	22.27
AT3G58880.1	Thale cress	cytosol	24.57	22.25
AT4G13960.2	Thale cress	cytosol	25.06	22.2
AT3G59250.1	Thale cress	cytosol	22.87	22.12
CDX98338	Canola	cytosol	21.9	22.11
KRH22109	Soybean	plastid	22.14	22.09
VIT_19s0093g00500.t01	Wine grape	cytosol	23.84	22.02
CDX98354	Canola	cytosol	22.63	21.83
AT3G58900.4	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	24.57	21.72
CDX67770	Canola	cytosol	20.68	21.68
CDY50412	Canola	cytosol, nucleus, peroxisome	23.36	21.67
CDX95484	Canola	cytosol	18.49	21.59
CDY67935	Canola	cytosol	23.11	21.44
AT4G14103.2	Thale cress	cytosol	23.11	21.44
CDX67783	Canola	cytosol	22.14	21.31
AT3G58860.1	Thale cress	cytosol	23.6	21.23
CDY58541	Canola	cytosol	23.36	21.01
AT5G38396.1	Thale cress	cytosol	23.6	21.0
CDY49258	Canola	cytosol	24.33	20.96
PGSC0003DMT400002698	Potato	mitochondrion	24.09	20.89
CDY65604	Canola	cytosol	24.57	20.87
CDY00593	Canola	cytosol	18.73	20.87
CDY29185	Canola	cytosol	21.65	20.84
AT5G38390.1	Thale cress	vacuole	23.11	20.83
AT3G59170.1	Thale cress	cytosol	23.84	20.72
AT3G03030.1	Thale cress	cytosol	23.84	20.68
AT5G41630.1	Thale cress	cytosol	22.87	20.66
AT1G52650.1	Thale cress	cytosol	23.36	20.65
CDX98353	Canola	cytosol	21.9	20.64
CDX67769	Canola	cytosol	20.92	20.62
AT3G58950.1	Thale cress	cytosol	20.92	20.62
AT5G38386.2	Thale cress	cytosol	20.19	20.6
AT3G58820.1	Thale cress	cytosol	20.68	20.58
AT4G14096.2	Thale cress	cytosol	23.36	20.51
AT2G42720.1	Thale cress	cytosol, nucleus, peroxisome	21.9	20.32
CDY57500	Canola	cytosol	23.36	20.25
AT3G03040.1	Thale cress	cytosol	23.11	20.13
AT3G59210.1	Thale cress	cytosol, nucleus, peroxisome	23.6	20.04
CDX84742	Canola	cytosol	22.14	20.0
AT3G59230.1	Thale cress	cytosol	23.84	19.96
AT3G59000.1	Thale cress	cytosol	23.84	19.96
AT1G58310.1	Thale cress	cytosol	24.33	19.8
CDX98342	Canola	cytosol	18.98	19.8
CDY65456	Canola	peroxisome	23.36	19.71
AT3G49150.1	Thale cress	cytosol	22.38	19.7
AT3G58930.1	Thale cress	cytosol	22.87	19.5
CDX67782	Canola	cytosol	20.68	19.5
AT3G59190.2	Thale cress	cytosol, nucleus, plastid	24.57	19.46
CDY18865	Canola	plastid	14.36	19.41
AT3G59160.1	Thale cress	cytosol	21.9	19.4
AT3G59200.1	Thale cress	cytosol	24.09	19.04
KRG91243	Soybean	cytosol	21.65	19.02
CDY00610	Canola	mitochondrion	24.09	18.86
AT3G59240.1	Thale cress	cytosol	23.11	18.85
CDX89015	Canola	cytosol	21.65	18.78
CDX71909	Canola	cytosol	23.11	18.59
AT4G00320.1	Thale cress	cytosol	22.87	18.54
AT5G38391.1	Thale cress	cytosol	8.03	18.54
CDX76838	Canola	cytosol	20.68	18.52
CDX98334	Canola	golgi, mitochondrion, plasma membrane	14.11	18.35
AT3G59150.1	Thale cress	cytosol	21.17	18.32
AT2G42730.1	Thale cress	cytosol	20.19	18.16
AT5G41830.2	Thale cress	cytosol	22.63	18.09
CDY34798	Canola	peroxisome	20.19	18.08
CDY33289	Canola	cytosol	21.9	17.79
CDY59410	Canola	cytosol	21.9	17.79
CDY06017	Canola	nucleus	24.82	17.62
AT5G41840.1	Thale cress	cytosol	22.87	17.41
AT3G58890.1	Thale cress	extracellular	12.17	17.06
AT3G59180.1	Thale cress	plasma membrane	18.98	16.42
CDY65605	Canola	cytosol	10.95	16.25
CDY29195	Canola	cytosol	21.17	16.14
AT1G56610.1	Thale cress	endoplasmic reticulum	20.19	15.51
CDY29197	Canola	cytosol	21.17	15.13
CDY29196	Canola	cytosol	19.71	14.73
CDX89484	Canola	cytosol	22.14	14.65
CDY07822	Canola	cytosol	20.92	14.53
AT3G59270.1	Thale cress	cytosol	11.68	14.33
AT3G58940.1	Thale cress	cytosol	21.41	14.24
AT5G35926.2	Thale cress	nucleus	14.84	14.09
CDX67785	Canola	cytosol	6.57	14.06
CDY07824	Canola	cytosol	18.49	13.87
CDY07837	Canola	cytosol	18.25	13.79
CDX98357	Canola	cytosol	10.95	13.01
CDX67788	Canola	cytosol	9.73	12.35
CDY06019	Canola	cytosol	22.87	10.85
Bra003368.1-P	Field mustard	cytosol	4.87	9.8
CDX67781	Canola	cytosol	17.52	9.2
CDX98352	Canola	cytosol, nucleus, plasma membrane	16.55	8.96
Bra007435.1-P	Field mustard	cytosol	0.97	3.51

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G13780_001	EnsemblPlants:GSMUA_Achr2P13780_001	EnsemblPlants:GSMUA_Achr2T13780_001	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	UniProt:M0S7R9	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR31639	SMART:SM00256
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000295C08F	SEG:seg	:	:

Description

Putative F-box/FBD/LRR-repeat protein At4g00160 [Source:GMGC_GENE;Acc:GSMUA_Achr2G13780_001]

Coordinates

chr2:+:15799817..15802088

Molecular Weight (calculated)

46636.0 Da

IEP (calculated)

5.295

GRAVY (calculated)

-0.001

Length

411 amino acids

Sequence
(BLAST)

001: MVDTDLKGDT ISELPDAVLH QILSFLSTRE AARTSVLSTR WRPLWSAVPS LHFYQEEFPR RESLLELVEG AWAARDADVT ISTFRLVVSE NIDRCYVRRW
101: LENAAERNVE EVEIEVSVGS GDDGSGIVPD YLLRCQSLRS LKLVLPLWKV VFDDGAVGPG SLTTMHLKGI QSCKSSLGTL ISSCPVLQEL RLEDCYFDLL
201: KITANELKWL TVSRCIFDAY NEVVISTPKL LSFHYTSGKA QGCFIRDMAN LVDASIVLFN LSLQNSSVRA WSVSEIFKGL SHASSLTITY LGNQQLSVEE
301: HLQYLPIFLN LKYLRLNILF SRECMEAIAY MLKHMPDLEI LVVHNELVWY SIIEEHIWWT SKELTGGMLN RLKEIQLGNF GSSNHETEFI EFLVKNGRIA
401: QDHDGSSLHQ K

Best Arabidopsis Sequence Match ( AT4G00160.1 )
(BLAST)

001: MEQGESLRIR VVMGKDRISE LPDALLIKIL SFLPTKIVVA TSVFSKQWRP LWKLVPNLEF DSEDYDDKEQ YTFSEIVCKS FLSHKAPVLE SFRLEFESEK
101: VDPVDIGLWV GIAFSRHLRE LVLVAADTGT GTAFKFPSSL CTCNTLETLR LVLLILVDIS SPVVMKSLRT LHLELVSYKD ESSIRNLLSG CPILEELLVI
201: RGEDSDIEVF TIDEVPSLKR LTINDDHDGQ EFWGYVINAP SLKYLLIEDL RCPGFCLNAP ELMEANIFDG TSITNDNFLG YLTSVKRLLL NLSPWKITYP
301: TGSIFYQLVS LEMYTREIDW WDLLTLMLEH SPKLQVLKLT DNCVKFHKNG LPGGKWNEPK YVPECLLSHL ETFVWRRFDW GREEEKEIAT YILKNARRLN
401: KATFSTNPVN SEELDKLKER RKVHNELDGV VRASNSCQFV FKFDTSYHVS DSS

Arabidopsis Description

F-box/FBD/LRR-repeat protein At4g00160 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.