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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G03030.1 Thale cress cytosol 71.19 70.89
CDY58541 Canola cytosol 57.42 59.3
AT3G58930.1 Thale cress cytosol 59.32 58.09
AT3G58950.1 Thale cress cytosol 48.09 54.44
AT3G58820.1 Thale cress cytosol 47.46 54.24
AT3G58900.4 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole 52.75 53.55
AT5G38396.1 Thale cress cytosol 51.48 52.6
AT5G38386.2 Thale cress cytosol 44.49 52.11
AT1G52650.1 Thale cress cytosol 51.06 51.83
AT3G59000.1 Thale cress cytosol 53.6 51.53
AT5G38390.1 Thale cress vacuole 49.58 51.32
AT4G13960.2 Thale cress cytosol 50.0 50.86
AT5G38392.1 Thale cress cytosol 23.31 50.69
AT3G58860.1 Thale cress cytosol 48.31 49.89
AT3G58910.1 Thale cress cytosol, nucleus, peroxisome 22.25 49.07
AT3G58890.1 Thale cress extracellular 30.3 48.81
AT3G58880.1 Thale cress cytosol 44.7 46.48
AT3G58940.1 Thale cress cytosol 54.03 41.26
AT5G38391.1 Thale cress cytosol 15.04 39.89
AT4G14096.2 Thale cress cytosol 39.19 39.53
AT4G14103.2 Thale cress cytosol 36.02 38.37
AT3G59230.1 Thale cress cytosol 38.56 37.07
AT3G59210.1 Thale cress cytosol, nucleus, peroxisome 37.92 36.98
AT1G58310.1 Thale cress cytosol 39.41 36.83
AT3G59250.1 Thale cress cytosol 32.84 36.47
AT2G42730.1 Thale cress cytosol 35.17 36.32
AT3G59170.1 Thale cress cytosol 35.38 35.31
AT3G49150.1 Thale cress cytosol 34.75 35.12
AT3G59200.1 Thale cress cytosol 38.35 34.81
AT2G42720.1 Thale cress cytosol, nucleus, peroxisome 32.42 34.54
AT3G59160.1 Thale cress cytosol 33.9 34.48
AT4G00320.1 Thale cress cytosol 36.65 34.12
AT3G59240.1 Thale cress cytosol 35.59 33.33
AT5G41840.1 Thale cress cytosol 38.14 33.33
AT5G41830.2 Thale cress cytosol 36.02 33.07
AT5G41630.1 Thale cress cytosol 31.14 32.31
AT3G59190.2 Thale cress cytosol, nucleus, plastid 35.38 32.18
AT3G59150.1 Thale cress cytosol 31.57 31.37
AT3G59270.1 Thale cress cytosol 22.03 31.04
AT3G59180.1 Thale cress plasma membrane 31.14 30.95
AT5G35926.2 Thale cress nucleus 25.0 27.25
AT1G56610.1 Thale cress endoplasmic reticulum 28.6 25.23
GSMUA_Achr2P13780_001 Banana cytosol 20.13 23.11
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:821150ProteinID:AAF26120.1ProteinID:AAF26956.1ProteinID:AEE73895.1
ArrayExpress:AT3G03040EnsemblPlantsGene:AT3G03040RefSeq:AT3G03040TAIR:AT3G03040RefSeq:AT3G03040-TAIR-GEnsemblPlants:AT3G03040.1
TAIR:AT3G03040.1InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:FBDGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0008150InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfRefSeq:NP_186954.1
PFAM:PF00646PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281PFscan:PS50181PANTHER:PTHR31639PANTHER:PTHR31639:SF6UniProt:Q9LDJ9SMART:SM00579
SUPFAM:SSF52047SUPFAM:SSF81383UniParc:UPI00000A3A37SEG:seg::
Description
F-box protein At3g03040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDJ9]
Coordinates
chr3:+:684389..686639
Molecular Weight (calculated)
54060.2 Da
IEP (calculated)
4.702
GRAVY (calculated)
-0.132
Length
472 amino acids
Sequence
(BLAST)
001: MDLLSSLPDE VRCLILSFLT TKESASTSVL SKKWRNLFAL VPNLDFDDSE FLHPEEGKRE RDGILQSFMD FVDRVLSLQG NSSIRKFSLK CETGVPPARV
101: NRWLCEVLQR DVSDIDLTID LGYGYYLPEE LFVSETLVNL KLKSAFNIDW WPGAEGTSLP MLKSLCVYGV RVFCDDELQE LLPCFPVLEE LQMSNMQWLD
201: SDETVSSATL TTLHITGIRS ENPKSISFDT PNLLSFVYTD FVAEDYPLVN MKNLSLARLA LRANDDQIKR VRGPSNDLLE YDVVRHFGNV VKLMNGIQNV
301: QELHLCPDTL ELLSVCCESM PVFNNVKKLL IYSDEDRGWQ AVPVLLRNCP RLETLIFEGI VHHVTDKCGD ACDCIFRKDK GRSLKSCPVK VVEINGFGVT
401: MKEKYLIEHF LDYFSCLKEM KIYINCEEDG VTQQVMKNRE VSKLVLDEME EYNEFYSCNV KLFLCKKKSI PQ
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.