Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G14096.2 | Thale cress | cytosol | 59.41 | 64.1 |
| AT4G14103.2 | Thale cress | cytosol | 55.05 | 62.75 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 51.09 | 53.31 |
| AT3G59160.1 | Thale cress | cytosol | 48.91 | 53.23 |
| AT3G59170.1 | Thale cress | cytosol | 48.91 | 52.22 |
| AT3G59250.1 | Thale cress | cytosol | 43.56 | 51.76 |
| AT3G59230.1 | Thale cress | cytosol | 49.31 | 50.71 |
| AT3G59270.1 | Thale cress | cytosol | 33.07 | 49.85 |
| AT3G59200.1 | Thale cress | cytosol | 50.89 | 49.42 |
| AT3G59240.1 | Thale cress | cytosol | 48.32 | 48.41 |
| AT5G41840.1 | Thale cress | cytosol | 50.49 | 47.22 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 48.51 | 47.21 |
| AT4G00320.1 | Thale cress | cytosol | 46.93 | 46.75 |
| AT3G49150.1 | Thale cress | cytosol | 42.38 | 45.82 |
| AT5G41830.2 | Thale cress | cytosol | 46.53 | 45.72 |
| AT3G59180.1 | Thale cress | plasma membrane | 42.18 | 44.84 |
| AT5G38392.1 | Thale cress | cytosol | 18.22 | 42.4 |
| AT5G38386.2 | Thale cress | cytosol | 33.66 | 42.18 |
| AT1G52650.1 | Thale cress | cytosol | 38.22 | 41.51 |
| AT3G58860.1 | Thale cress | cytosol | 37.43 | 41.36 |
| AT4G13960.2 | Thale cress | cytosol | 37.82 | 41.16 |
| AT5G35926.2 | Thale cress | nucleus | 35.25 | 41.11 |
| AT5G41630.1 | Thale cress | cytosol | 37.03 | 41.1 |
| AT5G38390.1 | Thale cress | vacuole | 36.83 | 40.79 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 37.43 | 40.65 |
| AT3G03030.1 | Thale cress | cytosol | 37.62 | 40.08 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 16.83 | 39.72 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 34.65 | 39.5 |
| AT3G03040.1 | Thale cress | cytosol | 36.83 | 39.41 |
| AT3G58820.1 | Thale cress | cytosol | 32.08 | 39.23 |
| AT3G58880.1 | Thale cress | cytosol | 35.25 | 39.21 |
| AT5G38396.1 | Thale cress | cytosol | 35.84 | 39.18 |
| AT2G42730.1 | Thale cress | cytosol | 35.45 | 39.17 |
| AT3G58950.1 | Thale cress | cytosol | 32.08 | 38.85 |
| AT3G59000.1 | Thale cress | cytosol | 37.03 | 38.09 |
| AT3G58890.1 | Thale cress | extracellular | 21.39 | 36.86 |
| AT3G58930.1 | Thale cress | cytosol | 34.46 | 36.1 |
| AT5G38391.1 | Thale cress | cytosol | 12.48 | 35.39 |
| AT3G59150.1 | Thale cress | cytosol | 32.67 | 34.74 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 31.68 | 29.91 |
| AT3G58940.1 | Thale cress | cytosol | 33.27 | 27.18 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 19.8 | 24.33 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:842200 | ProteinID:AAF82256.1 | ProteinID:AEE33534.1 |
| ArrayExpress:AT1G58310 | EnsemblPlantsGene:AT1G58310 | RefSeq:AT1G58310 | TAIR:AT1G58310 | RefSeq:AT1G58310-TAIR-G | EnsemblPlants:AT1G58310.1 |
| TAIR:AT1G58310.1 | Unigene:At.52256 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| RefSeq:NP_176127.1 | PFAM:PF00646 | PFAM:PF07723 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 |
| UniProt:Q9LQC1 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0000163182 | SEG:seg |
Description
Putative F-box protein At1g58310 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQC1]
Coordinates
chr1:+:21631947..21633642
Molecular Weight (calculated)
57669.5 Da
IEP (calculated)
4.713
GRAVY (calculated)
-0.076
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGRSRDII SGLPDSLLCH ILSFLNTKEA ASTSVLAKKW RYLFASVPNL DFDDSVHLRL GKRNPAVSGE DYLKMINERS DQLSTSFMDF VDQVLRLQDN
101: SPLHKFSLKI RDCVDIVRII CWILKVLERG VSDLELDMHL KWKSSLPSKI FLSETLVRLK LSVERGPFID VEDVHLPKLK TLHIVSVKFE KHGIGLNKLL
201: SGCHILEELN LEYISWCLWD FVSVSLTTLK RLTFCGEVMQ DENPISVSFN TPNLVYLMFT DAIADEYSTV NFDSLVEAHI NLQMSEDQVE QTRFSDSEGN
301: MEGCMVANAT ELIMGICNVK ILYLSVYTLE VLTYCCEAIP LFNNLTHLTI ESNSEVGWES VSGLLKNSPN LETLVFKGLV HRFTDKCGDM CLCKPWEEDE
401: EEEEDEETPT CLSSCPVKVL KILEFGKIYD DEIEKRIDQV KHFLEKIPDI EQLILHYNTP VDEDVIKVYQ QLRRHPKVAS SKCKLQLISD NLSLSSKDCA
501: LFGID
101: SPLHKFSLKI RDCVDIVRII CWILKVLERG VSDLELDMHL KWKSSLPSKI FLSETLVRLK LSVERGPFID VEDVHLPKLK TLHIVSVKFE KHGIGLNKLL
201: SGCHILEELN LEYISWCLWD FVSVSLTTLK RLTFCGEVMQ DENPISVSFN TPNLVYLMFT DAIADEYSTV NFDSLVEAHI NLQMSEDQVE QTRFSDSEGN
301: MEGCMVANAT ELIMGICNVK ILYLSVYTLE VLTYCCEAIP LFNNLTHLTI ESNSEVGWES VSGLLKNSPN LETLVFKGLV HRFTDKCGDM CLCKPWEEDE
401: EEEEDEETPT CLSSCPVKVL KILEFGKIYD DEIEKRIDQV KHFLEKIPDI EQLILHYNTP VDEDVIKVYQ QLRRHPKVAS SKCKLQLISD NLSLSSKDCA
501: LFGID
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.