Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G35926.2 | Thale cress | nucleus | 61.11 | 76.21 |
| AT4G00320.1 | Thale cress | cytosol | 61.48 | 65.48 |
| AT5G41830.2 | Thale cress | cytosol | 61.85 | 64.98 |
| AT5G41630.1 | Thale cress | cytosol | 45.74 | 54.29 |
| AT3G59250.1 | Thale cress | cytosol | 41.3 | 52.47 |
| AT4G14096.2 | Thale cress | cytosol | 43.89 | 50.64 |
| AT1G58310.1 | Thale cress | cytosol | 47.22 | 50.49 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 44.44 | 49.59 |
| AT4G14103.2 | Thale cress | cytosol | 40.56 | 49.44 |
| AT3G59230.1 | Thale cress | cytosol | 43.89 | 48.27 |
| AT3G59160.1 | Thale cress | cytosol | 40.19 | 46.77 |
| AT3G59170.1 | Thale cress | cytosol | 40.56 | 46.3 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 44.07 | 45.86 |
| AT3G59240.1 | Thale cress | cytosol | 42.41 | 45.44 |
| AT3G59200.1 | Thale cress | cytosol | 42.96 | 44.62 |
| AT3G49150.1 | Thale cress | cytosol | 38.52 | 44.54 |
| AT3G59270.1 | Thale cress | cytosol | 27.41 | 44.18 |
| AT3G59180.1 | Thale cress | plasma membrane | 38.52 | 43.79 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 35.37 | 41.08 |
| AT5G38390.1 | Thale cress | vacuole | 33.52 | 39.69 |
| AT5G38386.2 | Thale cress | cytosol | 29.44 | 39.45 |
| AT5G38396.1 | Thale cress | cytosol | 33.7 | 39.39 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 32.04 | 39.05 |
| AT3G58860.1 | Thale cress | cytosol | 32.96 | 38.95 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 15.37 | 38.78 |
| AT3G58820.1 | Thale cress | cytosol | 29.44 | 38.5 |
| AT3G59000.1 | Thale cress | cytosol | 35.0 | 38.49 |
| AT3G03040.1 | Thale cress | cytosol | 33.33 | 38.14 |
| AT3G58950.1 | Thale cress | cytosol | 29.44 | 38.13 |
| AT1G52650.1 | Thale cress | cytosol | 32.59 | 37.85 |
| AT5G38392.1 | Thale cress | cytosol | 15.19 | 37.79 |
| AT3G03030.1 | Thale cress | cytosol | 33.15 | 37.76 |
| AT2G42730.1 | Thale cress | cytosol | 31.85 | 37.64 |
| AT4G13960.2 | Thale cress | cytosol | 32.04 | 37.28 |
| AT3G58930.1 | Thale cress | cytosol | 33.15 | 37.14 |
| AT3G58880.1 | Thale cress | cytosol | 30.93 | 36.78 |
| AT3G58890.1 | Thale cress | extracellular | 19.26 | 35.49 |
| AT5G38391.1 | Thale cress | cytosol | 11.48 | 34.83 |
| AT3G59150.1 | Thale cress | cytosol | 29.63 | 33.68 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 27.04 | 27.29 |
| AT3G58940.1 | Thale cress | cytosol | 30.93 | 27.02 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 17.41 | 22.87 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:834189 | ProteinID:AED94735.1 | ArrayExpress:AT5G41840 | EnsemblPlantsGene:AT5G41840 |
| RefSeq:AT5G41840 | TAIR:AT5G41840 | RefSeq:AT5G41840-TAIR-G | EnsemblPlants:AT5G41840.1 | TAIR:AT5G41840.1 | Unigene:At.55311 |
| ProteinID:BAB10659.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| RefSeq:NP_198999.1 | PFAM:PF00646 | PFAM:PF07723 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 |
| UniProt:Q9FJ30 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000009CDE3 | SEG:seg |
Description
Putative F-box/LRR-repeat protein At5g41840 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ30]
Coordinates
chr5:-:16754436..16756263
Molecular Weight (calculated)
61691.0 Da
IEP (calculated)
6.411
GRAVY (calculated)
-0.282
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSRKKVVVG VSGDRISGLP DALICHILSF LPTKEAASTT VLAKRWKPLL AFVPNLNFDD SIYFHPRARR NKYSKSYESF MSFVDSVLAL QAKTKTPLKR
101: FHVKCEDVVD QSWVLEWIPK VLKRGVLDID LHITSSRNYC ENSSFYSLPS KIFVSKTLVR LKIQFQDGVH IDVEGGVSLP KLKTLHLDYF KIETSMLNKL
201: LSGCHALEEL VLANLMWADS SEDEACHVSV SIPTLKRLNF CRSEDFYEGE FHFYEDYDEE NINEGVSLSF DNPNLVYLEY SDVIVDKYKQ VSFDSLVEAN
301: LRLRKTPDQD ETDKVNVTKL LMGIHNVKIL YLSDDTLEVL SCCRERIPVF DNLLELTIKT TPYVGWKSLP PLLKSCPSLE TLVFEGLHHK YTKRCGDKDG
401: CLCKYENHWG TKKKKNVRTC LSSSLVKVLK ILKFGETFED ENEDGLDVDH DDYDDEDAVS CDEVGGVVEE QIEHVKHFLE TMPVLKQVIL YYNTPKDEDV
501: MKVFKKLEKL PRVASANCNV QISSKNLSLS STSTKRGTLL
101: FHVKCEDVVD QSWVLEWIPK VLKRGVLDID LHITSSRNYC ENSSFYSLPS KIFVSKTLVR LKIQFQDGVH IDVEGGVSLP KLKTLHLDYF KIETSMLNKL
201: LSGCHALEEL VLANLMWADS SEDEACHVSV SIPTLKRLNF CRSEDFYEGE FHFYEDYDEE NINEGVSLSF DNPNLVYLEY SDVIVDKYKQ VSFDSLVEAN
301: LRLRKTPDQD ETDKVNVTKL LMGIHNVKIL YLSDDTLEVL SCCRERIPVF DNLLELTIKT TPYVGWKSLP PLLKSCPSLE TLVFEGLHHK YTKRCGDKDG
401: CLCKYENHWG TKKKKNVRTC LSSSLVKVLK ILKFGETFED ENEDGLDVDH DDYDDEDAVS CDEVGGVVEE QIEHVKHFLE TMPVLKQVIL YYNTPKDEDV
501: MKVFKKLEKL PRVASANCNV QISSKNLSLS STSTKRGTLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.