Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G41830.2 | Thale cress | cytosol | 87.97 | 86.77 |
| AT5G41840.1 | Thale cress | cytosol | 65.48 | 61.48 |
| AT5G41630.1 | Thale cress | cytosol | 47.14 | 52.53 |
| AT5G35926.2 | Thale cress | nucleus | 43.98 | 51.5 |
| AT3G59250.1 | Thale cress | cytosol | 41.81 | 49.88 |
| AT4G14096.2 | Thale cress | cytosol | 45.36 | 49.15 |
| AT4G14103.2 | Thale cress | cytosol | 41.03 | 46.95 |
| AT1G58310.1 | Thale cress | cytosol | 46.75 | 46.93 |
| AT3G59230.1 | Thale cress | cytosol | 44.38 | 45.82 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 43.59 | 45.66 |
| AT3G59200.1 | Thale cress | cytosol | 44.58 | 43.46 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 44.18 | 43.16 |
| AT3G59160.1 | Thale cress | cytosol | 39.25 | 42.89 |
| AT3G59240.1 | Thale cress | cytosol | 42.6 | 42.86 |
| AT3G49150.1 | Thale cress | cytosol | 39.05 | 42.4 |
| AT3G59270.1 | Thale cress | cytosol | 28.01 | 42.39 |
| AT3G59170.1 | Thale cress | cytosol | 39.25 | 42.07 |
| AT3G59180.1 | Thale cress | plasma membrane | 37.48 | 40.0 |
| AT3G58860.1 | Thale cress | cytosol | 34.71 | 38.51 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 35.11 | 38.28 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 32.15 | 36.79 |
| AT3G58950.1 | Thale cress | cytosol | 30.18 | 36.69 |
| AT3G03040.1 | Thale cress | cytosol | 34.12 | 36.65 |
| AT3G03030.1 | Thale cress | cytosol | 34.12 | 36.5 |
| AT5G38386.2 | Thale cress | cytosol | 28.99 | 36.48 |
| AT5G38390.1 | Thale cress | vacuole | 32.54 | 36.18 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 15.19 | 35.98 |
| AT5G38396.1 | Thale cress | cytosol | 32.35 | 35.5 |
| AT5G38392.1 | Thale cress | cytosol | 15.19 | 35.48 |
| AT3G58880.1 | Thale cress | cytosol | 31.76 | 35.46 |
| AT2G42730.1 | Thale cress | cytosol | 31.95 | 35.45 |
| AT3G58820.1 | Thale cress | cytosol | 28.8 | 35.35 |
| AT1G52650.1 | Thale cress | cytosol | 32.35 | 35.27 |
| AT3G58930.1 | Thale cress | cytosol | 33.33 | 35.06 |
| AT5G38391.1 | Thale cress | cytosol | 12.23 | 34.83 |
| AT4G13960.2 | Thale cress | cytosol | 31.76 | 34.7 |
| AT3G59000.1 | Thale cress | cytosol | 33.53 | 34.62 |
| AT3G59150.1 | Thale cress | cytosol | 31.56 | 33.68 |
| AT3G58890.1 | Thale cress | extracellular | 18.93 | 32.76 |
| AT3G58940.1 | Thale cress | cytosol | 31.36 | 25.73 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 27.02 | 25.61 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 18.54 | 22.87 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:827939 | ProteinID:AAB62837.1 | ProteinID:AAF02795.1 | ProteinID:AEE81857.1 |
| ArrayExpress:AT4G00320 | EnsemblPlantsGene:AT4G00320 | RefSeq:AT4G00320 | TAIR:AT4G00320 | RefSeq:AT4G00320-TAIR-G | EnsemblPlants:AT4G00320.1 |
| TAIR:AT4G00320.1 | Unigene:At.54060 | ProteinID:CAB80790.1 | InterPro:F-box-like_dom_sf | InterPro:FBD | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_567169.2 | UniProt:P0C2G6 | PFAM:PF07723 | PO:PO:0009025 |
| PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0000196AD9 |
Description
Putative F-box/LRR-repeat protein At4g00320 [Source:UniProtKB/Swiss-Prot;Acc:P0C2G6]
Coordinates
chr4:+:139939..141643
Molecular Weight (calculated)
57617.6 Da
IEP (calculated)
7.284
GRAVY (calculated)
-0.049
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKKKCFDG SRDGISGLPD AMICHILSFL PTKVAASTTV LAKRWKPLLA FMPNLDFDES FRFDPRMTCE ERRKGSESFM LVVDSVLALQ AEANATLNKF
101: YVKCEGVEQN SVLEWIPKVL KRGVLDIDLQ IPSSRGFGSN STFYPLPSEI FVSKTLVRLK IQFQDGANVN VEGDVSLPML KTLHLDYVKM DTRMLQKLLS
201: GCHTLEELLL MNLIWKESSE PEPCFVSVSV RTLKILKFSR FENFMKAKDF KPIVLLSFDI PNLVYLEYLD TIADKYEQVR FDSLVKASIG LCKTSKQIEN
301: DNNNVTKLFM GICNVTILYL TEDTLKVLGC CRETMPVFEN LIHLTIRTGV HIGWKSLPHL LKNCPNLQTL VFEGMHHIYR KGRACGDVDE DGTCMCKNLD
401: NMRVKKDIDA CLSSSPVKVI KILNFGELCG FCEFCDVEED VAGQIKQVKQ FLETMPDLEK VILYYNTPED EDVMKVFKKL KKLPRVASAK CEVQIISDNI
501: NLSFTFR
101: YVKCEGVEQN SVLEWIPKVL KRGVLDIDLQ IPSSRGFGSN STFYPLPSEI FVSKTLVRLK IQFQDGANVN VEGDVSLPML KTLHLDYVKM DTRMLQKLLS
201: GCHTLEELLL MNLIWKESSE PEPCFVSVSV RTLKILKFSR FENFMKAKDF KPIVLLSFDI PNLVYLEYLD TIADKYEQVR FDSLVKASIG LCKTSKQIEN
301: DNNNVTKLFM GICNVTILYL TEDTLKVLGC CRETMPVFEN LIHLTIRTGV HIGWKSLPHL LKNCPNLQTL VFEGMHHIYR KGRACGDVDE DGTCMCKNLD
401: NMRVKKDIDA CLSSSPVKVI KILNFGELCG FCEFCDVEED VAGQIKQVKQ FLETMPDLEK VILYYNTPED EDVMKVFKKL KKLPRVASAK CEVQIISDNI
501: NLSFTFR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.