Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67782 | Canola | cytosol | 70.87 | 78.67 |
| CDX98353 | Canola | cytosol | 70.45 | 78.21 |
| AT3G59230.1 | Thale cress | cytosol | 58.47 | 57.64 |
| AT4G14096.2 | Thale cress | cytosol | 54.96 | 56.84 |
| AT3G59250.1 | Thale cress | cytosol | 47.93 | 54.59 |
| AT4G14103.2 | Thale cress | cytosol | 49.38 | 53.95 |
| AT1G58310.1 | Thale cress | cytosol | 53.31 | 51.09 |
| AT3G59160.1 | Thale cress | cytosol | 48.97 | 51.08 |
| AT3G59170.1 | Thale cress | cytosol | 48.97 | 50.11 |
| AT3G59200.1 | Thale cress | cytosol | 53.31 | 49.62 |
| AT3G59270.1 | Thale cress | cytosol | 33.68 | 48.66 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 50.83 | 47.4 |
| AT3G59240.1 | Thale cress | cytosol | 48.97 | 47.02 |
| AT3G59180.1 | Thale cress | plasma membrane | 45.66 | 46.53 |
| AT3G49150.1 | Thale cress | cytosol | 43.39 | 44.97 |
| AT5G41840.1 | Thale cress | cytosol | 49.59 | 44.44 |
| AT4G00320.1 | Thale cress | cytosol | 45.66 | 43.59 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 41.74 | 43.44 |
| AT5G38392.1 | Thale cress | cytosol | 19.21 | 42.86 |
| AT5G41830.2 | Thale cress | cytosol | 45.25 | 42.61 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 18.8 | 42.52 |
| AT5G35926.2 | Thale cress | nucleus | 36.78 | 41.11 |
| AT5G38386.2 | Thale cress | cytosol | 33.88 | 40.69 |
| AT3G59000.1 | Thale cress | cytosol | 40.91 | 40.33 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 36.78 | 40.18 |
| AT3G58950.1 | Thale cress | cytosol | 34.5 | 40.05 |
| AT2G42730.1 | Thale cress | cytosol | 37.6 | 39.82 |
| AT5G41630.1 | Thale cress | cytosol | 37.4 | 39.78 |
| AT3G58860.1 | Thale cress | cytosol | 37.4 | 39.61 |
| AT5G38390.1 | Thale cress | vacuole | 37.19 | 39.47 |
| AT4G13960.2 | Thale cress | cytosol | 37.81 | 39.44 |
| AT5G38396.1 | Thale cress | cytosol | 37.4 | 39.18 |
| AT3G58880.1 | Thale cress | cytosol | 36.57 | 38.99 |
| AT3G58820.1 | Thale cress | cytosol | 33.06 | 38.74 |
| AT1G52650.1 | Thale cress | cytosol | 36.78 | 38.28 |
| AT5G38391.1 | Thale cress | cytosol | 14.05 | 38.2 |
| AT3G03040.1 | Thale cress | cytosol | 36.98 | 37.92 |
| AT3G03030.1 | Thale cress | cytosol | 36.78 | 37.55 |
| AT3G58890.1 | Thale cress | extracellular | 22.52 | 37.2 |
| AT3G58930.1 | Thale cress | cytosol | 35.74 | 35.89 |
| AT3G59150.1 | Thale cress | cytosol | 34.71 | 35.37 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 33.47 | 30.28 |
| AT3G58940.1 | Thale cress | cytosol | 35.74 | 27.99 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 20.04 | 23.6 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825090 | ProteinID:AEE79889.1 | ProteinID:AEE79890.1 |
| ProteinID:AEE79891.1 | ProteinID:AEE79892.1 | EMBL:AK119022 | ProteinID:ANM65848.1 | ArrayExpress:AT3G59210 | EnsemblPlantsGene:AT3G59210 |
| RefSeq:AT3G59210 | TAIR:AT3G59210 | RefSeq:AT3G59210-TAIR-G | EnsemblPlants:AT3G59210.1 | TAIR:AT3G59210.1 | ProteinID:CAB91591.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| RefSeq:NP_001190132.1 | RefSeq:NP_001190133.1 | RefSeq:NP_001190134.1 | RefSeq:NP_001319796.1 | RefSeq:NP_191480.2 | PFAM:PF00646 |
| PFAM:PF07723 | PO:PO:0000293 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q8GW80 |
| SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000ADFFA | SEG:seg |
Description
F-box/LRR-repeat protein At3g59210 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW80]
Coordinates
chr3:+:21889476..21891944
Molecular Weight (calculated)
54357.7 Da
IEP (calculated)
5.116
GRAVY (calculated)
-0.059
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDCSKDIIN CLPDNLLCQI LSNLSTKEAA LTSLLSKRWR YLFALVPNLD FDVLPSLHPE VAMQDQDQTS FIDFVDRVLK LRGKDHINKF SLKCGDGIED
101: EDVFPWILNT LRHGVSDLSL HVSPSLVYWL PSKVFASKTL VRLKIGPKDG PRVKLRNVCL PKLKTLNLDS VVFEEGKIGF AKLLSGCPVL EELSLLNLAW
201: DRWDSCSVSS KILKRLTLYC AHSSRNPKSV SFDTPNVVYF EYSDNIANKY PKVNFDSLVE ASIGIRMTKV QKANARYVSD VDEETEMVGN ATDLLMGICN
301: VKTLYLSYDT LETLNLCCQV IPVFNNLTHL TIESHPELGW ESLPNLLKSC PNLGTLVFQG LLHKATDRCG DVCMCQGLEN SHSCLSSSPV KCLKILKFGE
401: TNDDDDMEIE MEQIKNFLEK MPNLEQLIIY YESSIDNDLV RVSSQLQEVP TVASLKCKIQ VISDNLSLSS TLPISLSMEN GFHL
101: EDVFPWILNT LRHGVSDLSL HVSPSLVYWL PSKVFASKTL VRLKIGPKDG PRVKLRNVCL PKLKTLNLDS VVFEEGKIGF AKLLSGCPVL EELSLLNLAW
201: DRWDSCSVSS KILKRLTLYC AHSSRNPKSV SFDTPNVVYF EYSDNIANKY PKVNFDSLVE ASIGIRMTKV QKANARYVSD VDEETEMVGN ATDLLMGICN
301: VKTLYLSYDT LETLNLCCQV IPVFNNLTHL TIESHPELGW ESLPNLLKSC PNLGTLVFQG LLHKATDRCG DVCMCQGLEN SHSCLSSSPV KCLKILKFGE
401: TNDDDDMEIE MEQIKNFLEK MPNLEQLIIY YESSIDNDLV RVSSQLQEVP TVASLKCKIQ VISDNLSLSS TLPISLSMEN GFHL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.