Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G00320.1 | Thale cress | cytosol | 52.53 | 47.14 |
| AT5G41830.2 | Thale cress | cytosol | 52.09 | 46.11 |
| AT5G41840.1 | Thale cress | cytosol | 54.29 | 45.74 |
| AT5G35926.2 | Thale cress | nucleus | 39.12 | 41.11 |
| AT3G59250.1 | Thale cress | cytosol | 36.48 | 39.06 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 39.78 | 37.4 |
| AT1G58310.1 | Thale cress | cytosol | 41.1 | 37.03 |
| AT3G59230.1 | Thale cress | cytosol | 39.78 | 36.86 |
| AT4G14096.2 | Thale cress | cytosol | 37.8 | 36.75 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 41.76 | 36.61 |
| AT3G49150.1 | Thale cress | cytosol | 36.26 | 35.33 |
| AT4G14103.2 | Thale cress | cytosol | 34.29 | 35.21 |
| AT3G59170.1 | Thale cress | cytosol | 36.48 | 35.1 |
| AT3G59240.1 | Thale cress | cytosol | 38.68 | 34.92 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 35.6 | 34.84 |
| AT3G59200.1 | Thale cress | cytosol | 39.34 | 34.42 |
| AT3G58860.1 | Thale cress | cytosol | 33.63 | 33.48 |
| AT3G59160.1 | Thale cress | cytosol | 33.85 | 33.19 |
| AT3G59270.1 | Thale cress | cytosol | 24.4 | 33.13 |
| AT5G38392.1 | Thale cress | cytosol | 15.6 | 32.72 |
| AT3G59180.1 | Thale cress | plasma membrane | 34.07 | 32.63 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 15.16 | 32.24 |
| AT1G52650.1 | Thale cress | cytosol | 32.53 | 31.83 |
| AT5G38390.1 | Thale cress | vacuole | 31.87 | 31.8 |
| AT5G38386.2 | Thale cress | cytosol | 28.13 | 31.76 |
| AT4G13960.2 | Thale cress | cytosol | 31.87 | 31.25 |
| AT3G03040.1 | Thale cress | cytosol | 32.31 | 31.14 |
| AT3G58880.1 | Thale cress | cytosol | 30.99 | 31.06 |
| AT3G58820.1 | Thale cress | cytosol | 28.13 | 30.99 |
| AT5G38396.1 | Thale cress | cytosol | 31.43 | 30.95 |
| AT3G58930.1 | Thale cress | cytosol | 32.75 | 30.91 |
| AT3G59000.1 | Thale cress | cytosol | 32.75 | 30.35 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 29.01 | 29.8 |
| AT5G38391.1 | Thale cress | cytosol | 11.65 | 29.78 |
| AT3G03030.1 | Thale cress | cytosol | 30.55 | 29.32 |
| AT2G42730.1 | Thale cress | cytosol | 29.45 | 29.32 |
| AT3G58950.1 | Thale cress | cytosol | 26.81 | 29.26 |
| AT3G58890.1 | Thale cress | extracellular | 17.58 | 27.3 |
| AT3G59150.1 | Thale cress | cytosol | 28.35 | 27.16 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 28.35 | 24.11 |
| AT3G58940.1 | Thale cress | cytosol | 31.21 | 22.98 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 20.66 | 22.87 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:834165 | ProteinID:AED94701.1 | ArrayExpress:AT5G41630 | EnsemblPlantsGene:AT5G41630 |
| RefSeq:AT5G41630 | TAIR:AT5G41630 | RefSeq:AT5G41630-TAIR-G | EnsemblPlants:AT5G41630.1 | TAIR:AT5G41630.1 | Unigene:At.55304 |
| ProteinID:BAB11469.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_198978.1 |
| PFAM:PF00646 | PFAM:PF07723 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q9FFR7 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI00000A1BC0 | SEG:seg | : | : | : |
Description
Putative F-box/LRR-repeat protein At5g41630 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFR7]
Coordinates
chr5:+:16650282..16651835
Molecular Weight (calculated)
52308.7 Da
IEP (calculated)
4.724
GRAVY (calculated)
-0.113
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKMKDFGGG RDIISDLPDA LIGHILSFLP TIEAVATTVL AKRWKPLLSF VHSLDFDDSL CLHPAKTNEE KRTNATSFMR FVDGVLALQG NARINKFRLN
101: GKHIINERWV LDWIQNVLKR DVSDIRLYVS SCSDGFDSSF YHLPPEIFVS QTLVTLIIMF EGDINISVGR EVSLPKLKTL HLYHFKIKLS TFNKLISGCH
201: ALEELMMINW KWDESSEPEP CFVTIYLPNL KILEYCRFER YDEANDKVSL LFHNPKVVYL EFFDSIADRY QQVSFGSLVE ARLGIRLTYD QVYNHLETEY
301: YVSSKEKSNV TNLLTGICNV KILYLSDETL EVFGCCRDTI PVFSNLIELT IQTKPHIIWK PLPAMLNNCP NLITLIFEGM HHIYSDRCED EDGCLCRYPT
401: NFVGGVVARP CLSSSPVKVL KILNFGEICD VHEDDEDDDD DDDDEDEEFV YCLRE
101: GKHIINERWV LDWIQNVLKR DVSDIRLYVS SCSDGFDSSF YHLPPEIFVS QTLVTLIIMF EGDINISVGR EVSLPKLKTL HLYHFKIKLS TFNKLISGCH
201: ALEELMMINW KWDESSEPEP CFVTIYLPNL KILEYCRFER YDEANDKVSL LFHNPKVVYL EFFDSIADRY QQVSFGSLVE ARLGIRLTYD QVYNHLETEY
301: YVSSKEKSNV TNLLTGICNV KILYLSDETL EVFGCCRDTI PVFSNLIELT IQTKPHIIWK PLPAMLNNCP NLITLIFEGM HHIYSDRCED EDGCLCRYPT
401: NFVGGVVARP CLSSSPVKVL KILNFGEICD VHEDDEDDDD DDDDEDEEFV YCLRE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.