Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89015 | Canola | cytosol | 61.89 | 62.03 |
| CDY00610 | Canola | mitochondrion | 58.74 | 53.14 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 37.47 | 40.18 |
| AT2G42730.1 | Thale cress | cytosol | 37.89 | 39.39 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 16.84 | 37.38 |
| AT3G59250.1 | Thale cress | cytosol | 32.42 | 36.24 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 35.37 | 36.13 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 35.37 | 34.71 |
| AT5G38392.1 | Thale cress | cytosol | 15.79 | 34.56 |
| AT5G38386.2 | Thale cress | cytosol | 29.26 | 34.49 |
| AT3G59230.1 | Thale cress | cytosol | 35.58 | 34.42 |
| AT4G14096.2 | Thale cress | cytosol | 33.89 | 34.4 |
| AT3G59170.1 | Thale cress | cytosol | 34.11 | 34.25 |
| AT3G59000.1 | Thale cress | cytosol | 35.37 | 34.22 |
| AT5G38390.1 | Thale cress | vacuole | 32.84 | 34.21 |
| AT4G14103.2 | Thale cress | cytosol | 31.37 | 33.63 |
| AT3G59240.1 | Thale cress | cytosol | 35.58 | 33.53 |
| AT3G58930.1 | Thale cress | cytosol | 33.89 | 33.4 |
| AT3G59160.1 | Thale cress | cytosol | 32.21 | 32.97 |
| AT1G52650.1 | Thale cress | cytosol | 32.21 | 32.9 |
| AT1G58310.1 | Thale cress | cytosol | 34.74 | 32.67 |
| AT3G58820.1 | Thale cress | cytosol | 28.21 | 32.45 |
| AT3G58860.1 | Thale cress | cytosol | 31.16 | 32.39 |
| AT3G58880.1 | Thale cress | cytosol | 30.95 | 32.38 |
| AT3G58950.1 | Thale cress | cytosol | 28.42 | 32.37 |
| AT3G59200.1 | Thale cress | cytosol | 35.16 | 32.12 |
| AT5G38396.1 | Thale cress | cytosol | 31.16 | 32.03 |
| AT5G38391.1 | Thale cress | cytosol | 12.0 | 32.02 |
| AT5G41830.2 | Thale cress | cytosol | 34.53 | 31.91 |
| AT3G49150.1 | Thale cress | cytosol | 31.16 | 31.69 |
| AT4G13960.2 | Thale cress | cytosol | 30.95 | 31.68 |
| AT3G03030.1 | Thale cress | cytosol | 31.58 | 31.65 |
| AT3G03040.1 | Thale cress | cytosol | 31.37 | 31.57 |
| AT4G00320.1 | Thale cress | cytosol | 33.68 | 31.56 |
| AT3G59270.1 | Thale cress | cytosol | 21.68 | 30.75 |
| AT3G58890.1 | Thale cress | extracellular | 18.74 | 30.38 |
| AT5G41840.1 | Thale cress | cytosol | 33.68 | 29.63 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 32.0 | 29.29 |
| AT3G59180.1 | Thale cress | plasma membrane | 29.05 | 29.05 |
| AT5G41630.1 | Thale cress | cytosol | 27.16 | 28.35 |
| AT5G35926.2 | Thale cress | nucleus | 23.37 | 25.64 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 27.16 | 24.11 |
| AT3G58940.1 | Thale cress | cytosol | 29.68 | 22.82 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 18.32 | 21.17 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825084 | ProteinID:AEE79883.2 | ArrayExpress:AT3G59150 | EnsemblPlantsGene:AT3G59150 |
| RefSeq:AT3G59150 | TAIR:AT3G59150 | RefSeq:AT3G59150-TAIR-G | EnsemblPlants:AT3G59150.1 | TAIR:AT3G59150.1 | EMBL:AY099781 |
| EMBL:BT006604 | ProteinID:CAB86943.1 | ProteinID:CAB91585.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| RefSeq:NP_191474.3 | PFAM:PF00646 | PO:PO:0000293 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 |
| UniProt:Q9LX56 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000AB12B |
| SEG:seg | : | : | : | : | : |
Description
F-box protein At3g59150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX56]
Coordinates
chr3:+:21872831..21874422
Molecular Weight (calculated)
53872.7 Da
IEP (calculated)
8.980
GRAVY (calculated)
-0.028
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MEANKKAKPS YGDVISNLPN DLLCRILSYL STKEAALTSI LSKRWSNLLL SIPILDFDDS VLLKPQKGQR KNVFFKAFVD RLLSQRVETS SHVQRVSLKC
101: RQGGVEPDCV IKWILTTVRD LGVLDLSLCI DFGIFHLPFN VFRSKTLVKL RIGTMIRLSQ FPSDVVSPTL NSLVLDLVEF RDGDKVEFRQ ILLAFPSLQS
201: LRVHESNKWK FWNGSASSRT LKSLVYRSDD DSSAPKPCVS FDTPSLVYLD YSDMVADKYE NLKFDSLVEA RLDLHLTAFQ IMRKPNNIGI VSGDVTTLFK
301: GIRNVKILCL SPDALEALYY RGEKIPMFNN LITLSLGSDK PHGSPFIFWK LLPSLLNNSL KLETLIIKGL VHYVAEGWEG LSPMTPMSRL CFSWDTVSDS
401: LSSSAMKVLE ISGYKGTWQE LNQMKRFLGN LSRLEVVRVY HKAMDDKERI NVMFDLFLLP KVSSECDIQV MKETA
101: RQGGVEPDCV IKWILTTVRD LGVLDLSLCI DFGIFHLPFN VFRSKTLVKL RIGTMIRLSQ FPSDVVSPTL NSLVLDLVEF RDGDKVEFRQ ILLAFPSLQS
201: LRVHESNKWK FWNGSASSRT LKSLVYRSDD DSSAPKPCVS FDTPSLVYLD YSDMVADKYE NLKFDSLVEA RLDLHLTAFQ IMRKPNNIGI VSGDVTTLFK
301: GIRNVKILCL SPDALEALYY RGEKIPMFNN LITLSLGSDK PHGSPFIFWK LLPSLLNNSL KLETLIIKGL VHYVAEGWEG LSPMTPMSRL CFSWDTVSDS
401: LSSSAMKVLE ISGYKGTWQE LNQMKRFLGN LSRLEVVRVY HKAMDDKERI NVMFDLFLLP KVSSECDIQV MKETA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.