CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59150.1	CDX73678	AT3G51920.1	17360592
AT3G59150.1	CDX95314	AT3G51920.1	17360592
AT3G59150.1	CDY23174	AT3G51920.1	17360592
AT3G59150.1	CDY06478	AT4G14640.1	17360592
AT3G59150.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89015	Canola	cytosol	72.38	80.17
AT3G59150.1	Thale cress	cytosol	53.14	58.74
CDX98355	Canola	cytosol	28.19	35.07
CDX98338	Canola	cytosol	27.05	34.89
CDX67786	Canola	cytosol	11.81	34.83
CDX67768	Canola	cytosol	27.05	34.8
CDY29185	Canola	cytosol	28.0	34.43
CDX98354	Canola	cytosol	27.62	34.04
CDX98353	Canola	cytosol	28.19	33.95
CDY49258	Canola	cytosol	30.48	33.54
CDX67783	Canola	cytosol	27.24	33.49
CDX67782	Canola	cytosol	27.81	33.49
CDX98342	Canola	cytosol	24.95	33.25
CDY65604	Canola	cytosol	30.48	33.06
CDX98339	Canola	cytosol, extracellular	25.71	32.93
CDX67769	Canola	cytosol	26.1	32.85
CDY58541	Canola	cytosol	28.57	32.82
CDX67770	Canola	cytosol	24.38	32.65
CDY00593	Canola	cytosol	22.86	32.52
CDY67935	Canola	cytosol	27.24	32.28
CDY59410	Canola	cytosol	31.05	32.21
CDY33289	Canola	cytosol	30.86	32.02
CDY18865	Canola	plastid	18.29	31.58
CDX95484	Canola	cytosol	21.14	31.53
CDX67785	Canola	cytosol	11.43	31.25
CDY57500	Canola	cytosol	28.19	31.22
CDX84742	Canola	cytosol	26.86	30.99
CDX98340	Canola	cytosol	12.76	30.59
CDX71909	Canola	cytosol	29.52	30.33
CDY34798	Canola	peroxisome	26.1	29.85
CDY65456	Canola	peroxisome	27.62	29.77
CDY50412	Canola	cytosol, nucleus, peroxisome	24.95	29.57
CDX76838	Canola	cytosol	25.71	29.41
CDX98334	Canola	golgi, mitochondrion, plasma membrane	17.52	29.11
CDY65605	Canola	cytosol	14.67	27.8
CDY06017	Canola	nucleus	30.29	27.46
CDX98357	Canola	cytosol	17.52	26.59
CDY29195	Canola	cytosol	27.05	26.35
CDY29197	Canola	cytosol	28.76	26.26
CDY07824	Canola	cytosol	26.67	25.55
CDX67788	Canola	cytosol	15.62	25.31
CDY29196	Canola	cytosol	25.9	24.73
CDY07822	Canola	cytosol	27.81	24.66
GSMUA_Achr2P13780_001	Banana	cytosol	18.86	24.09
CDX89484	Canola	cytosol	27.43	23.19
CDY07837	Canola	cytosol	23.05	22.24
CDX98352	Canola	cytosol, nucleus, plasma membrane	28.57	19.76
CDX67781	Canola	cytosol	28.95	19.41
CDY06019	Canola	cytosol	30.48	18.48

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDY00610	ProteinID:CDY00610	ProteinID:CDY00610.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00110393001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR31639
PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EF3B81	SEG:seg

Description

BnaC04g23150D

Coordinates

chrLK031920:+:724659..726482

Molecular Weight (calculated)

59703.6 Da

IEP (calculated)

9.702

GRAVY (calculated)

-0.185

Length

525 amino acids

Sequence
(BLAST)

001: MNRRRLFCVR SHSRLERIQL SAARRLPKLI FSPEGSEKLF THHHTGRIME GNKKANPSSR DLISTLPDDV LCYILSFLTT KEAALTQVLS KRWSNLLQLV
101: PILDFDDSLL LNRRMGREQT KVFMEFVERV LFARVKNSSP VKKASFKLSH LDLHERFDRV PLWVKRVMDL GASELCLSFG GDFKYVSFVL LYSDLKSKAL
201: VNLRIGRVYL IHHDGTFPDS VSHTLTTLFL DSVQFTYGKP GFEAILSAFP NLQNLRLHES KEWYYWDGSV SSPTLKRFVY RRDDDTSGPK PCVKFDTPGL
301: AYLEYSDVVA AKYENLRLDS LVEARLDLLL TAGQIMRKNA PDNVGFVPGD VSTLFKGIRH VKILCLSPDA LDTLYYRGGE IPVFNNLISL SLGSDRPHGS
401: PYIFKKLLPS LLLKAPNLQT LIIKGLGHYV KKGWEVGWHL RLSLDDMYDA LSSSGLKVLQ INGYEGTGEE LSHMERFLGT LPHLEMVRVT HKGVDDGERR
501: RLVNDLLCLT RASPKCKVQV MKESA

Best Arabidopsis Sequence Match ( AT3G59150.1 )
(BLAST)

001: MEANKKAKPS YGDVISNLPN DLLCRILSYL STKEAALTSI LSKRWSNLLL SIPILDFDDS VLLKPQKGQR KNVFFKAFVD RLLSQRVETS SHVQRVSLKC
101: RQGGVEPDCV IKWILTTVRD LGVLDLSLCI DFGIFHLPFN VFRSKTLVKL RIGTMIRLSQ FPSDVVSPTL NSLVLDLVEF RDGDKVEFRQ ILLAFPSLQS
201: LRVHESNKWK FWNGSASSRT LKSLVYRSDD DSSAPKPCVS FDTPSLVYLD YSDMVADKYE NLKFDSLVEA RLDLHLTAFQ IMRKPNNIGI VSGDVTTLFK
301: GIRNVKILCL SPDALEALYY RGEKIPMFNN LITLSLGSDK PHGSPFIFWK LLPSLLNNSL KLETLIIKGL VHYVAEGWEG LSPMTPMSRL CFSWDTVSDS
401: LSSSAMKVLE ISGYKGTWQE LNQMKRFLGN LSRLEVVRVY HKAMDDKERI NVMFDLFLLP KVSSECDIQV MKETA

Arabidopsis Description

F-box protein At3g59150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.