CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71909	Canola	cytosol	52.77	89.43
CDX67788	Canola	cytosol	20.55	54.94
CDX98357	Canola	cytosol	21.94	54.91
CDX67785	Canola	cytosol	11.66	52.6
CDX67782	Canola	cytosol	26.33	52.29
CDX98354	Canola	cytosol	25.64	52.11
CDX67783	Canola	cytosol	25.52	51.76
CDX98355	Canola	cytosol	25.06	51.42
CDX98353	Canola	cytosol	25.4	50.46
CDY57500	Canola	cytosol	26.1	47.68
CDX67786	Canola	cytosol	9.7	47.19
CDY06017	Canola	nucleus	29.56	44.21
CDY00593	Canola	cytosol	15.82	37.13
CDX67768	Canola	cytosol	17.32	36.76
CDY58541	Canola	cytosol	19.28	36.54
CDY33289	Canola	cytosol	21.25	36.36
CDX98342	Canola	cytosol	16.51	36.29
CDY59410	Canola	cytosol	21.13	36.17
CDX98338	Canola	cytosol	16.97	36.12
CDX67770	Canola	cytosol	16.28	35.97
CDX98339	Canola	cytosol, extracellular	16.97	35.85
CDY29185	Canola	cytosol	17.55	35.6
CDX67769	Canola	cytosol	17.09	35.49
CDY49258	Canola	cytosol	19.4	35.22
CDY67935	Canola	cytosol	17.9	34.99
CDY50412	Canola	cytosol, nucleus, peroxisome	17.67	34.54
CDY65604	Canola	cytosol	19.05	34.09
CDX84742	Canola	cytosol	17.78	33.85
CDY65456	Canola	peroxisome	18.71	33.26
CDX76838	Canola	cytosol	17.55	33.12
CDY34798	Canola	peroxisome	17.55	33.12
CDX95484	Canola	cytosol	13.28	32.67
CDX98334	Canola	golgi, mitochondrion, plasma membrane	11.89	32.59
CDX98352	Canola	cytosol, nucleus, plasma membrane	28.52	32.54
CDX89015	Canola	cytosol	17.78	32.49
CDX67781	Canola	cytosol	29.21	32.31
AT1G56610.1	Thale cress	endoplasmic reticulum	19.52	31.59
CDY65605	Canola	cytosol	10.05	31.41
CDY00610	Canola	mitochondrion	18.48	30.48
CDY18865	Canola	plastid	10.62	30.26
CDX98340	Canola	cytosol	7.62	30.14
CDY29195	Canola	cytosol	17.21	27.64
CDY07822	Canola	cytosol	17.9	26.18
CDX89484	Canola	cytosol	18.71	26.09
CDY29197	Canola	cytosol	17.32	26.09
CDY07824	Canola	cytosol	16.28	25.73
CDY29196	Canola	cytosol	15.7	24.73
CDY07837	Canola	cytosol	15.36	24.45
GSMUA_Achr2P13780_001	Banana	cytosol	10.85	22.87

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDY06019	ProteinID:CDY06019	ProteinID:CDY06019.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00121865001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EEC6FE	SEG:seg	:	:	:	:

Description

BnaA09g37610D

Coordinates

chrLK031967:-:244222..253905

Molecular Weight (calculated)

98401.7 Da

IEP (calculated)

6.104

GRAVY (calculated)

0.035

Length

866 amino acids

Sequence
(BLAST)

001: MSPDSCLPGT SRSERKVERE RNLDPIAMSS KDYMSGLPDC LISHILSFVS NKEAASTSVL AKRWRYLFAL TRDLHFDDFV YLNPEKKSKT SRTIITSWLL
101: KVMDRGVLDL DLQIISSDMD CPLPSEMFVS ETLVKLFIRI CGYSDTIADK YPKVEFSSLV EARLDLRMTK DQLVKAKFSD DDRSLPVEMV ASATNFFMGI
201: CNVKVLHLSS DTLEVLTYCC KPIPEFNNLV HLTIQTDLEV SWESLPALLK NCPKLETLVF QGLHYGDINH TPWEDISACL SSSPVKKLKV LKFGAVSCDI
301: DDMDRQMYII KHFEETMPNL EEVVLYYVTR DHLIIYNCVL YFSNNWTSLK TPSQFEKKIS KAVVVSLSLI SLFFFVIDVD GVDPVAMSSK RLNLGSKDYI
401: SGLPDCLISH ILSFVPTKEA ASTSVLAKRW RYLFALTPNL EFNDSIYLNS EIANQRKKKG KTPRSFVDFV DRVLVLHHNV PLNRFSLKCE DVIHPAIIIG
501: WLLKVMDRGV LDLDLNISSE MGYRLPSEMF CSETLVRLKL GIRDVLTINK EKGVFLPKVK TLCLDYIMVK NSVFAKLLSG CHALEELVLN NLFEVKGSCS
601: VFHNTLERLV VRRSRTFDEN LESVSFSTPN LVYLDYSDAI ANMYPKVEFN SLVEASLDLI MTSDQIMVGN ATNFLMGICN VKILHLSYNT LQVLTYCCKP
701: IPQFNNLIHL TIQTDPEVAW EPLPALLKNC PKLETLVFEG LHHKIKNCGE EDMCLCKPWE EGIPTCLSSS PVKVLKILKF GDIFGDEDIE EQIKQVQHFL
801: ETMPNLEQLI LYYDTSFDED VNVVSAQLQW HPRVASSQCK ISVISDNLCL SSTVPCSVVR KWGRLL

Best Arabidopsis Sequence Match ( AT3G59190.2 )
(BLAST)

001: MSSKRMDSGS KDIISNLPDA LLCHVLSFLP TTEAASTSVL AKRWRFLLAF VPNLDLDNMI YDRPKMGRRK RLELRKSFKL FVDRVMALQG NAPLKKFSLR
101: CKIGSDPSRV NGWVLKVLDR GVEELDLYIA SEYEYPLPPK VLMTKTLVSL KVSGTDEFTI DVGEFFLPKL KTLHLSAISF GDEGGPPFAK LISACHALEE
201: LVMIKMMWDY WEFCSVSSPS LKRVSIDCEN IDENPKSVSF DTPNLVYLEF TDTVAVKYPK VNFDSLVEAS IGLRMTPDQV FDARDLVNRH HGYKRCKGAN
301: AADFMMGVCN VKTMYLSSEA LEVLTFCCKK AIPVFNNLIH LTVETDERVD WESLPILLKN CPNLETLIFE GLHYGDLNQC FDKDYSFKDT NECYGDQGDT
401: CQCKPWYGTP VWLSSSPVKI LKVLKFGQIS SYKDDMERQT DLIEHFLESM PNLEQVILFY DTTYDDDLKI VSTQLQMLEK VASPKCKIQV ISDNISYSFT
501: VYSSSSTKGL NFFKDTFPV

Arabidopsis Description

F-box/RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN3]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.