CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98352	Canola	cytosol, nucleus, plasma membrane	89.14	91.96
CDY57500	Canola	cytosol	37.93	62.66
CDY06017	Canola	nucleus	42.4	57.34
AT3G59200.1	Thale cress	cytosol	36.65	55.19
CDX67785	Canola	cytosol	11.49	46.88
CDX67782	Canola	cytosol	25.93	46.56
CDX98353	Canola	cytosol	24.65	44.27
CDX67783	Canola	cytosol	23.75	43.56
CDX98354	Canola	cytosol	23.5	43.19
CDX98355	Canola	cytosol	22.61	41.94
CDX71909	Canola	cytosol	26.95	41.29
CDX67788	Canola	cytosol	16.73	40.43
CDX98357	Canola	cytosol	17.37	39.31
CDX98340	Canola	cytosol	10.09	36.07
CDX98334	Canola	golgi, mitochondrion, plasma membrane	14.05	34.81
CDY65605	Canola	cytosol	11.88	33.57
CDY33289	Canola	cytosol	21.46	33.2
CDX67786	Canola	cytosol	7.54	33.15
CDY59410	Canola	cytosol	21.33	33.0
CDY49258	Canola	cytosol	19.92	32.7
CDY58541	Canola	cytosol	19.03	32.6
CDY00593	Canola	cytosol	15.07	31.98
CDY29185	Canola	cytosol	17.37	31.85
CDY67935	Canola	cytosol	18.01	31.83
CDY65604	Canola	cytosol	19.67	31.82
CDX67768	Canola	cytosol	16.35	31.37
CDX95484	Canola	cytosol	13.92	30.97
CDX98338	Canola	cytosol	16.09	30.96
CDX84742	Canola	cytosol	17.75	30.55
CDY65456	Canola	peroxisome	18.9	30.39
CDX98339	Canola	cytosol, extracellular	15.84	30.24
CDX98342	Canola	cytosol	15.07	29.95
CDY34798	Canola	peroxisome	17.5	29.85
CDX89015	Canola	cytosol	18.01	29.75
CDX76838	Canola	cytosol	17.37	29.63
CDY18865	Canola	plastid	11.49	29.61
CDX67769	Canola	cytosol	15.71	29.5
CDY06019	Canola	cytosol	32.31	29.21
CDX67770	Canola	cytosol	14.56	29.08
CDY00610	Canola	mitochondrion	19.41	28.95
CDY29195	Canola	cytosol	18.01	26.16
CDY50412	Canola	cytosol, nucleus, peroxisome	14.69	25.96
CDY07837	Canola	cytosol	17.88	25.74
CDY07822	Canola	cytosol	19.28	25.51
CDY29197	Canola	cytosol	18.65	25.39
CDY07824	Canola	cytosol	17.37	24.82
CDY29196	Canola	cytosol	17.24	24.55
CDX89484	Canola	cytosol	17.88	22.54
GSMUA_Achr2P13780_001	Banana	cytosol	9.2	17.52

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:A0A078BSS8	EnsemblPlants:CDX67781	ProteinID:CDX67781	ProteinID:CDX67781.1
InterPro:FBD	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00098974001	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF07723
ScanProsite:PS00194	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	InterPro:Thioredoxin_CS
UniParc:UPI0004EEA242	SEG:seg	:	:	:	:

Description

BnaA07g18210D

Coordinates

chrLK031787:+:2239658..2243217

Molecular Weight (calculated)

88143.3 Da

IEP (calculated)

4.473

GRAVY (calculated)

-0.076

Length

783 amino acids

Sequence
(BLAST)

001: MSKTLVKLKL AGTDEFIIDV KEVSLPKLKT LHMNDVSFAD ESGAAFGKLV SGCHVLEELV MVKMTWDFCG ACSVSNPTLK RLIIYCEYDD ENPESVSLDT
101: PSLVYLELTD TVAAKYPKMN LDSLVEASVG IRMTPDQVFR GRDLVNRHYG YKLRKDVSAT DFLMGISHVK ILYLSSQALE VLTFCCKAIP VFNNLIHLTI
201: ETDQDVDWES LPNLLKNCPN LETLVFEGLH YGDTNQCFDD GYRFKDTNEC FVTGADRCVC KPWLGTPSWL SSSPVKKLKV LKFGEITNYK DDMDKQSDLI
301: NHFVQTMPNL EEVVLYYDTP FDSDLEIVSN GFQQLEKVAS TRCKIQVVSD NISFTATVHS SSSSSTSGLV FFKNTFPILS SPTSCLSFRQ KKQLPHHVSD
401: LDLRLLSEYP LPHEIFVSKT LVRLKLGEGH DVAFSADVED VFLPKLKILD IDSVVFEEEG VGFARLLSGC PVLEELVLTN MGWENWEFCS VSVTTLKRLT
501: IFLDDFDENP MSVAFDTPSL EYLEYSDNIA REYPKVNFSS LVEAHIGLRL SEDQSADADF SEEDGYFSEE YEEEEKEMVG NATNFLFGLC NVEILYLSAK
601: TLEVFTFCCE ATPVFNNLIQ LTIESNDESG WDSLPALLPN CPNLETLIFK GLVHKRTDGC GNMCLCKPPK NPSCLSSSAV KVLKIILSVD IDDEGMEMEQ
701: IMHFLEKMPR LEQLVVYFNI SYNPSVFDLS KKLQSIPRIA SPKCNFQVIS PNLSLSSTLP STLSKIWSAP PNEEYSWFLK ALK

Best Arabidopsis Sequence Match ( AT3G59190.2 )
(BLAST)

001: MSSKRMDSGS KDIISNLPDA LLCHVLSFLP TTEAASTSVL AKRWRFLLAF VPNLDLDNMI YDRPKMGRRK RLELRKSFKL FVDRVMALQG NAPLKKFSLR
101: CKIGSDPSRV NGWVLKVLDR GVEELDLYIA SEYEYPLPPK VLMTKTLVSL KVSGTDEFTI DVGEFFLPKL KTLHLSAISF GDEGGPPFAK LISACHALEE
201: LVMIKMMWDY WEFCSVSSPS LKRVSIDCEN IDENPKSVSF DTPNLVYLEF TDTVAVKYPK VNFDSLVEAS IGLRMTPDQV FDARDLVNRH HGYKRCKGAN
301: AADFMMGVCN VKTMYLSSEA LEVLTFCCKK AIPVFNNLIH LTVETDERVD WESLPILLKN CPNLETLIFE GLHYGDLNQC FDKDYSFKDT NECYGDQGDT
401: CQCKPWYGTP VWLSSSPVKI LKVLKFGQIS SYKDDMERQT DLIEHFLESM PNLEQVILFY DTTYDDDLKI VSTQLQMLEK VASPKCKIQV ISDNISYSFT
501: VYSSSSTKGL NFFKDTFPV

Arabidopsis Description

F-box/RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN3]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.