Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57500 | Canola | cytosol | 60.19 | 66.03 |
| CDY06017 | Canola | nucleus | 63.85 | 57.34 |
| AT4G14096.2 | Thale cress | cytosol | 50.38 | 55.98 |
| AT3G59250.1 | Thale cress | cytosol | 45.0 | 55.06 |
| AT4G14103.2 | Thale cress | cytosol | 46.73 | 54.85 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 49.62 | 53.31 |
| AT3G59230.1 | Thale cress | cytosol | 50.0 | 52.95 |
| AT1G58310.1 | Thale cress | cytosol | 49.42 | 50.89 |
| AT3G59170.1 | Thale cress | cytosol | 43.65 | 47.99 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 47.12 | 47.21 |
| AT3G59270.1 | Thale cress | cytosol | 30.19 | 46.87 |
| AT3G59160.1 | Thale cress | cytosol | 41.54 | 46.55 |
| AT3G59180.1 | Thale cress | plasma membrane | 41.73 | 45.68 |
| AT3G49150.1 | Thale cress | cytosol | 40.96 | 45.61 |
| AT3G59240.1 | Thale cress | cytosol | 43.46 | 44.84 |
| AT5G41830.2 | Thale cress | cytosol | 44.23 | 44.75 |
| AT4G00320.1 | Thale cress | cytosol | 43.46 | 44.58 |
| AT5G41840.1 | Thale cress | cytosol | 44.62 | 42.96 |
| AT3G58860.1 | Thale cress | cytosol | 37.5 | 42.67 |
| AT5G38392.1 | Thale cress | cytosol | 17.69 | 42.4 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 37.12 | 41.51 |
| AT5G38386.2 | Thale cress | cytosol | 31.54 | 40.69 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 16.73 | 40.65 |
| AT5G38390.1 | Thale cress | vacuole | 35.58 | 40.57 |
| AT5G38391.1 | Thale cress | cytosol | 13.85 | 40.45 |
| AT4G13960.2 | Thale cress | cytosol | 35.96 | 40.3 |
| AT1G52650.1 | Thale cress | cytosol | 35.96 | 40.22 |
| AT5G38396.1 | Thale cress | cytosol | 35.38 | 39.83 |
| AT5G41630.1 | Thale cress | cytosol | 34.42 | 39.34 |
| AT3G03030.1 | Thale cress | cytosol | 35.77 | 39.24 |
| AT3G58880.1 | Thale cress | cytosol | 34.23 | 39.21 |
| AT2G42730.1 | Thale cress | cytosol | 34.04 | 38.73 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 32.69 | 38.37 |
| AT3G03040.1 | Thale cress | cytosol | 34.81 | 38.35 |
| AT5G35926.2 | Thale cress | nucleus | 31.92 | 38.34 |
| AT3G59000.1 | Thale cress | cytosol | 35.96 | 38.09 |
| AT3G58950.1 | Thale cress | cytosol | 30.38 | 37.89 |
| AT3G58890.1 | Thale cress | extracellular | 21.35 | 37.88 |
| AT3G58930.1 | Thale cress | cytosol | 34.42 | 37.14 |
| AT3G58820.1 | Thale cress | cytosol | 29.23 | 36.8 |
| CDX67781 | Canola | cytosol | 55.19 | 36.65 |
| CDX98352 | Canola | cytosol, nucleus, plasma membrane | 51.73 | 35.44 |
| AT3G59150.1 | Thale cress | cytosol | 32.12 | 35.16 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 31.73 | 30.84 |
| AT3G58940.1 | Thale cress | cytosol | 33.85 | 28.48 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 19.04 | 24.09 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825089 | ProteinID:AEE79888.1 | EMBL:AK117886 | ArrayExpress:AT3G59200 |
| EnsemblPlantsGene:AT3G59200 | RefSeq:AT3G59200 | TAIR:AT3G59200 | RefSeq:AT3G59200-TAIR-G | EnsemblPlants:AT3G59200.1 | TAIR:AT3G59200.1 |
| Unigene:At.34650 | EMBL:BT005902 | ProteinID:CAB91590.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_191479.1 | PFAM:PF00646 | PFAM:PF07723 | PFscan:PS50181 |
| PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q9LX51 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI0000060D9C | : | : | : | : | : |
Description
F-box/LRR-repeat protein At3g59200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX51]
Coordinates
chr3:+:21887172..21889423
Molecular Weight (calculated)
59001.6 Da
IEP (calculated)
4.571
GRAVY (calculated)
-0.176
Length
520 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFVSRDRIS SLPNPVVSHI LSFLPTKEAA STSVLSKKWR YLFAYVTNLD FDDSDYQDGK PKSDVELSRS FMEFVDRVLA LQGNGSVNKF SLECSNYDVD
101: LARVTGWILN VLGRGVSELD LSILEYPLPS EIFVSKTLVR LKLGPANDLT LTLDRKDVFL PKLKTLYIDC VDVQERGFGF VKLLSGCPVL EELVLMNIGW
201: ENWKFCSVSV KTLKRLTFFC EETYENPKSV SFDTPNLVYL EYSDAIASKY PKVNFNSLVE AHIGLRLTED QSGDADFSEE DYFSEGDEKK QMVGNATDFL
301: KGISTVQILY LSAQAIEVLT FCCEPIPVFN NLIQLTIENN SEIRWDSLPG LLKNCPNLET LVLKRLLHKY NKACGNVCCC KRPKQPSCLS SSPVKVLKIF
401: LFDDNDEEDG SEMRQIKYFL EKMPRLEELV VYYNTAYDPA VLELSKKLQK IPKIASPKCK IQVISENLSL SSTVPSFLTT RWSSLPPEEA YPWVDSPPPQ
501: IIDPMLEYGS PPEDDDSWLY
101: LARVTGWILN VLGRGVSELD LSILEYPLPS EIFVSKTLVR LKLGPANDLT LTLDRKDVFL PKLKTLYIDC VDVQERGFGF VKLLSGCPVL EELVLMNIGW
201: ENWKFCSVSV KTLKRLTFFC EETYENPKSV SFDTPNLVYL EYSDAIASKY PKVNFNSLVE AHIGLRLTED QSGDADFSEE DYFSEGDEKK QMVGNATDFL
301: KGISTVQILY LSAQAIEVLT FCCEPIPVFN NLIQLTIENN SEIRWDSLPG LLKNCPNLET LVLKRLLHKY NKACGNVCCC KRPKQPSCLS SSPVKVLKIF
401: LFDDNDEEDG SEMRQIKYFL EKMPRLEELV VYYNTAYDPA VLELSKKLQK IPKIASPKCK IQVISENLSL SSTVPSFLTT RWSSLPPEEA YPWVDSPPPQ
501: IIDPMLEYGS PPEDDDSWLY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.