Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT3G58890.1 | Thale cress | extracellular | 38.85 | 55.29 |
CDY29185 | Canola | cytosol | 55.16 | 53.86 |
CDY49258 | Canola | cytosol | 59.95 | 52.41 |
AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 58.27 | 52.26 |
AT4G13960.2 | Thale cress | cytosol | 57.07 | 51.29 |
AT3G58930.1 | Thale cress | cytosol | 59.23 | 51.24 |
AT5G38386.2 | Thale cress | cytosol | 48.92 | 50.62 |
AT3G59000.1 | Thale cress | cytosol | 59.23 | 50.31 |
CDY65604 | Canola | cytosol | 58.03 | 50.0 |
AT5G38390.1 | Thale cress | vacuole | 54.2 | 49.56 |
AT1G52650.1 | Thale cress | cytosol | 54.92 | 49.25 |
Bra024503.1-P | Field mustard | cytosol | 39.33 | 48.96 |
AT3G58820.1 | Thale cress | cytosol | 48.2 | 48.67 |
AT3G03030.1 | Thale cress | cytosol | 54.92 | 48.31 |
AT3G03040.1 | Thale cress | cytosol | 54.44 | 48.09 |
AT5G38396.1 | Thale cress | cytosol | 53.24 | 48.05 |
AT3G58860.1 | Thale cress | cytosol | 50.36 | 45.95 |
CDY29195 | Canola | cytosol | 56.59 | 43.78 |
AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 22.3 | 43.46 |
CDY29197 | Canola | cytosol | 58.03 | 42.09 |
AT3G58880.1 | Thale cress | cytosol | 45.56 | 41.85 |
CDY29196 | Canola | cytosol | 54.92 | 41.64 |
CDY07824 | Canola | cytosol | 54.68 | 41.61 |
CDY07822 | Canola | cytosol | 58.03 | 40.88 |
AT5G38392.1 | Thale cress | cytosol | 20.62 | 39.63 |
CDY07837 | Canola | cytosol | 47.72 | 36.58 |
AT4G14096.2 | Thale cress | cytosol | 41.01 | 36.54 |
AT3G58940.1 | Thale cress | cytosol | 53.0 | 35.76 |
AT4G14103.2 | Thale cress | cytosol | 36.69 | 34.54 |
AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 40.05 | 34.5 |
AT5G38391.1 | Thale cress | cytosol | 14.63 | 34.27 |
AT2G42730.1 | Thale cress | cytosol | 37.41 | 34.14 |
AT3G59250.1 | Thale cress | cytosol | 34.77 | 34.12 |
AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 35.49 | 33.41 |
AT3G59230.1 | Thale cress | cytosol | 39.33 | 33.4 |
AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 40.05 | 32.18 |
AT1G58310.1 | Thale cress | cytosol | 38.85 | 32.08 |
AT3G59170.1 | Thale cress | cytosol | 36.21 | 31.92 |
AT3G59160.1 | Thale cress | cytosol | 34.77 | 31.25 |
AT3G59240.1 | Thale cress | cytosol | 37.17 | 30.75 |
AT3G59270.1 | Thale cress | cytosol | 24.46 | 30.45 |
AT3G59200.1 | Thale cress | cytosol | 37.89 | 30.38 |
AT4G00320.1 | Thale cress | cytosol | 36.69 | 30.18 |
AT3G49150.1 | Thale cress | cytosol | 33.09 | 29.55 |
AT5G41840.1 | Thale cress | cytosol | 38.13 | 29.44 |
AT5G41830.2 | Thale cress | cytosol | 36.21 | 29.38 |
AT3G59150.1 | Thale cress | cytosol | 32.37 | 28.42 |
AT3G59180.1 | Thale cress | plasma membrane | 32.13 | 28.21 |
AT5G41630.1 | Thale cress | cytosol | 29.26 | 26.81 |
AT5G35926.2 | Thale cress | nucleus | 26.14 | 25.17 |
AT1G56610.1 | Thale cress | endoplasmic reticulum | 29.98 | 23.36 |
GSMUA_Achr2P13780_001 | Banana | cytosol | 20.62 | 20.92 |
Protein Annotations
Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825064 | ProteinID:AEE79853.1 | ArrayExpress:AT3G58950 | EnsemblPlantsGene:AT3G58950 |
RefSeq:AT3G58950 | TAIR:AT3G58950 | RefSeq:AT3G58950-TAIR-G | EnsemblPlants:AT3G58950.1 | TAIR:AT3G58950.1 | ProteinID:CAB88312.1 |
InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | RefSeq:NP_191454.1 | PFAM:PF00646 |
PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q9LXQ7 | SMART:SM00256 | SMART:SM00579 |
SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000A0658 | : | : | : |
Description
Putative F-box protein At3g58950 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ7]
Coordinates
chr3:-:21783989..21785840
Molecular Weight (calculated)
48057.3 Da
IEP (calculated)
5.829
GRAVY (calculated)
-0.131
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLFSSLPDE VLCHILSFLT TKEAALASVV SKRWRNQFAL VPNLDIDEEG KREREEILLS FMDFVDNVLA LQADSPIKKF SLKCKTGVHP RRLDAWARLG
101: PVLPMLKTLI IDSAWIRCDT IETFLPTFPV LEELSMSINE WPDWDETVTS ASLRKLSIFT IGCENFSNPK SISFDIPSLV YFEYYDMVAE DYPKVNLTSV
201: VEARISLLLD QDQIKRGRAP NNDEDDVLLR LRNGWKLMSG IRNVQKLYIS LDTLQVLSLC CKSMPVFNNL KLLSVKTAEN EGWEGMPVLL RNCPHLETLV
301: FEGLRHFVTN KCGDACDYVS REDKGRSLVS CPVKKLQIKG FRGTIRELEM IKHFLYSFRC LEKVEIYAEE KGRTRTDLEV PGMFELIARM LRLYNEFYSC
401: DVQFLVRSSL DKKWTAQ
101: PVLPMLKTLI IDSAWIRCDT IETFLPTFPV LEELSMSINE WPDWDETVTS ASLRKLSIFT IGCENFSNPK SISFDIPSLV YFEYYDMVAE DYPKVNLTSV
201: VEARISLLLD QDQIKRGRAP NNDEDDVLLR LRNGWKLMSG IRNVQKLYIS LDTLQVLSLC CKSMPVFNNL KLLSVKTAEN EGWEGMPVLL RNCPHLETLV
301: FEGLRHFVTN KCGDACDYVS REDKGRSLVS CPVKKLQIKG FRGTIRELEM IKHFLYSFRC LEKVEIYAEE KGRTRTDLEV PGMFELIARM LRLYNEFYSC
401: DVQFLVRSSL DKKWTAQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.