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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G58890.1 Thale cress extracellular 38.85 55.29
CDY29185 Canola cytosol 55.16 53.86
CDY49258 Canola cytosol 59.95 52.41
AT3G58900.4 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole 58.27 52.26
AT4G13960.2 Thale cress cytosol 57.07 51.29
AT3G58930.1 Thale cress cytosol 59.23 51.24
AT5G38386.2 Thale cress cytosol 48.92 50.62
AT3G59000.1 Thale cress cytosol 59.23 50.31
CDY65604 Canola cytosol 58.03 50.0
AT5G38390.1 Thale cress vacuole 54.2 49.56
AT1G52650.1 Thale cress cytosol 54.92 49.25
Bra024503.1-P Field mustard cytosol 39.33 48.96
AT3G58820.1 Thale cress cytosol 48.2 48.67
AT3G03030.1 Thale cress cytosol 54.92 48.31
AT3G03040.1 Thale cress cytosol 54.44 48.09
AT5G38396.1 Thale cress cytosol 53.24 48.05
AT3G58860.1 Thale cress cytosol 50.36 45.95
CDY29195 Canola cytosol 56.59 43.78
AT3G58910.1 Thale cress cytosol, nucleus, peroxisome 22.3 43.46
CDY29197 Canola cytosol 58.03 42.09
AT3G58880.1 Thale cress cytosol 45.56 41.85
CDY29196 Canola cytosol 54.92 41.64
CDY07824 Canola cytosol 54.68 41.61
CDY07822 Canola cytosol 58.03 40.88
AT5G38392.1 Thale cress cytosol 20.62 39.63
CDY07837 Canola cytosol 47.72 36.58
AT4G14096.2 Thale cress cytosol 41.01 36.54
AT3G58940.1 Thale cress cytosol 53.0 35.76
AT4G14103.2 Thale cress cytosol 36.69 34.54
AT3G59210.1 Thale cress cytosol, nucleus, peroxisome 40.05 34.5
AT5G38391.1 Thale cress cytosol 14.63 34.27
AT2G42730.1 Thale cress cytosol 37.41 34.14
AT3G59250.1 Thale cress cytosol 34.77 34.12
AT2G42720.1 Thale cress cytosol, nucleus, peroxisome 35.49 33.41
AT3G59230.1 Thale cress cytosol 39.33 33.4
AT3G59190.2 Thale cress cytosol, nucleus, plastid 40.05 32.18
AT1G58310.1 Thale cress cytosol 38.85 32.08
AT3G59170.1 Thale cress cytosol 36.21 31.92
AT3G59160.1 Thale cress cytosol 34.77 31.25
AT3G59240.1 Thale cress cytosol 37.17 30.75
AT3G59270.1 Thale cress cytosol 24.46 30.45
AT3G59200.1 Thale cress cytosol 37.89 30.38
AT4G00320.1 Thale cress cytosol 36.69 30.18
AT3G49150.1 Thale cress cytosol 33.09 29.55
AT5G41840.1 Thale cress cytosol 38.13 29.44
AT5G41830.2 Thale cress cytosol 36.21 29.38
AT3G59150.1 Thale cress cytosol 32.37 28.42
AT3G59180.1 Thale cress plasma membrane 32.13 28.21
AT5G41630.1 Thale cress cytosol 29.26 26.81
AT5G35926.2 Thale cress nucleus 26.14 25.17
AT1G56610.1 Thale cress endoplasmic reticulum 29.98 23.36
GSMUA_Achr2P13780_001 Banana cytosol 20.62 20.92
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:825064ProteinID:AEE79853.1ArrayExpress:AT3G58950EnsemblPlantsGene:AT3G58950
RefSeq:AT3G58950TAIR:AT3G58950RefSeq:AT3G58950-TAIR-GEnsemblPlants:AT3G58950.1TAIR:AT3G58950.1ProteinID:CAB88312.1
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:FBDGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0008150InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfRefSeq:NP_191454.1PFAM:PF00646
PFscan:PS50181PANTHER:PTHR31639PANTHER:PTHR31639:SF6UniProt:Q9LXQ7SMART:SM00256SMART:SM00579
SUPFAM:SSF52047SUPFAM:SSF81383UniParc:UPI00000A0658:::
Description
Putative F-box protein At3g58950 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ7]
Coordinates
chr3:-:21783989..21785840
Molecular Weight (calculated)
48057.3 Da
IEP (calculated)
5.829
GRAVY (calculated)
-0.131
Length
417 amino acids
Sequence
(BLAST)
001: MDLFSSLPDE VLCHILSFLT TKEAALASVV SKRWRNQFAL VPNLDIDEEG KREREEILLS FMDFVDNVLA LQADSPIKKF SLKCKTGVHP RRLDAWARLG
101: PVLPMLKTLI IDSAWIRCDT IETFLPTFPV LEELSMSINE WPDWDETVTS ASLRKLSIFT IGCENFSNPK SISFDIPSLV YFEYYDMVAE DYPKVNLTSV
201: VEARISLLLD QDQIKRGRAP NNDEDDVLLR LRNGWKLMSG IRNVQKLYIS LDTLQVLSLC CKSMPVFNNL KLLSVKTAEN EGWEGMPVLL RNCPHLETLV
301: FEGLRHFVTN KCGDACDYVS REDKGRSLVS CPVKKLQIKG FRGTIRELEM IKHFLYSFRC LEKVEIYAEE KGRTRTDLEV PGMFELIARM LRLYNEFYSC
401: DVQFLVRSSL DKKWTAQ
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.