Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 4
- extracellular 4
- cytosol 2
- vacuole 4
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38386.2 | Thale cress | cytosol | 65.79 | 74.44 |
| AT1G52650.1 | Thale cress | cytosol | 64.91 | 63.66 |
| AT4G13960.2 | Thale cress | cytosol | 64.25 | 63.15 |
| AT5G38396.1 | Thale cress | cytosol | 62.72 | 61.9 |
| AT3G59000.1 | Thale cress | cytosol | 64.47 | 59.88 |
| AT3G58820.1 | Thale cress | cytosol | 53.07 | 58.6 |
| AT5G38391.1 | Thale cress | cytosol | 22.59 | 57.87 |
| AT3G58950.1 | Thale cress | cytosol | 49.56 | 54.2 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 55.26 | 54.19 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 24.34 | 51.87 |
| AT5G38392.1 | Thale cress | cytosol | 24.56 | 51.61 |
| AT3G58930.1 | Thale cress | cytosol | 53.51 | 50.62 |
| AT3G03040.1 | Thale cress | cytosol | 51.32 | 49.58 |
| AT3G03030.1 | Thale cress | cytosol | 51.1 | 49.16 |
| AT3G58860.1 | Thale cress | cytosol | 48.9 | 48.8 |
| AT3G58890.1 | Thale cress | extracellular | 31.14 | 48.46 |
| AT3G58880.1 | Thale cress | cytosol | 46.49 | 46.7 |
| AT3G59250.1 | Thale cress | cytosol | 37.28 | 40.0 |
| AT4G14096.2 | Thale cress | cytosol | 39.04 | 38.03 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 36.18 | 37.25 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 39.47 | 37.19 |
| AT2G42730.1 | Thale cress | cytosol | 37.06 | 36.98 |
| AT3G59230.1 | Thale cress | cytosol | 39.69 | 36.86 |
| AT1G58310.1 | Thale cress | cytosol | 40.79 | 36.83 |
| AT3G59170.1 | Thale cress | cytosol | 38.16 | 36.79 |
| AT3G59160.1 | Thale cress | cytosol | 37.06 | 36.42 |
| AT4G14103.2 | Thale cress | cytosol | 35.31 | 36.34 |
| AT3G58940.1 | Thale cress | cytosol | 48.46 | 35.76 |
| AT3G59200.1 | Thale cress | cytosol | 40.57 | 35.58 |
| AT3G49150.1 | Thale cress | cytosol | 35.96 | 35.12 |
| AT3G59240.1 | Thale cress | cytosol | 37.72 | 34.13 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 38.38 | 33.72 |
| AT5G41840.1 | Thale cress | cytosol | 39.69 | 33.52 |
| AT3G59150.1 | Thale cress | cytosol | 34.21 | 32.84 |
| AT4G00320.1 | Thale cress | cytosol | 36.18 | 32.54 |
| AT3G59270.1 | Thale cress | cytosol | 23.9 | 32.54 |
| AT5G41830.2 | Thale cress | cytosol | 36.18 | 32.1 |
| AT5G41630.1 | Thale cress | cytosol | 31.8 | 31.87 |
| AT3G59180.1 | Thale cress | plasma membrane | 32.24 | 30.95 |
| AT5G35926.2 | Thale cress | nucleus | 27.85 | 29.33 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 32.24 | 27.48 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 20.83 | 23.11 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:833824 | ProteinID:AED94308.1 | ArrayExpress:AT5G38390 | EnsemblPlantsGene:AT5G38390 |
| RefSeq:AT5G38390 | TAIR:AT5G38390 | RefSeq:AT5G38390-TAIR-G | EnsemblPlants:AT5G38390.1 | TAIR:AT5G38390.1 | ProteinID:BAB09351.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | RefSeq:NP_198655.1 | PFAM:PF00646 |
| PFAM:PF08387 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 |
| UniProt:Q9FF23 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000A61C2 |
| SEG:seg | : | : | : | : | : |
Description
Putative F-box protein At5g38390 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF23]
Coordinates
chr5:+:15366011..15368053
Molecular Weight (calculated)
52179.7 Da
IEP (calculated)
4.798
GRAVY (calculated)
0.081
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLSNLPYE LLCHILSFLT TKEAALTSVL SKRWRNLIAF VPNVDIVDHD IRELFMDFVD RVLALQGNSP INKFSLDCSG VDSDRVDCWI QNVMVRGVSE
101: LNLSIFVDSV FEDDYNLFPK VFENKKLVKL GLSYISWLDG SIFLPMLKTL VLESVLLSVE KFEILLHALP ALEELVMNNI YWKERDVVDL IVSSESLKTL
201: TINFIVCTHT LSFDTPILAY LSYSGYVVDD YAEAKMENLF EARISLLVVE GDISRVRALI NNDLLEDDEY DVLQFENVWK LMNGIRNIRC LYLSPNTLEV
301: LSLCCESMPV FKNLKSLSIK SAENRGWQAM PVLLRNCPHL ETLVLEGLLH HVTDKCGDAC DCVSREDKGR SLTSCPVKVL EIKGFQGTTK EMNMIKHFLE
401: YFPCLKELKM YMEENDPAQL RVPEVITGEM MERYKKSSSC NVQLLVGGKL YKKWTP
101: LNLSIFVDSV FEDDYNLFPK VFENKKLVKL GLSYISWLDG SIFLPMLKTL VLESVLLSVE KFEILLHALP ALEELVMNNI YWKERDVVDL IVSSESLKTL
201: TINFIVCTHT LSFDTPILAY LSYSGYVVDD YAEAKMENLF EARISLLVVE GDISRVRALI NNDLLEDDEY DVLQFENVWK LMNGIRNIRC LYLSPNTLEV
301: LSLCCESMPV FKNLKSLSIK SAENRGWQAM PVLLRNCPHL ETLVLEGLLH HVTDKCGDAC DCVSREDKGR SLTSCPVKVL EIKGFQGTTK EMNMIKHFLE
401: YFPCLKELKM YMEENDPAQL RVPEVITGEM MERYKKSSSC NVQLLVGGKL YKKWTP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.