Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G52650.1 | Thale cress | cytosol | 76.51 | 76.34 |
| AT5G38396.1 | Thale cress | cytosol | 64.44 | 64.72 |
| AT5G38390.1 | Thale cress | vacuole | 63.15 | 64.25 |
| AT3G58820.1 | Thale cress | cytosol | 56.68 | 63.68 |
| AT5G38386.2 | Thale cress | cytosol | 54.53 | 62.78 |
| AT3G59000.1 | Thale cress | cytosol | 66.38 | 62.73 |
| AT5G38392.1 | Thale cress | cytosol | 27.16 | 58.06 |
| AT3G58950.1 | Thale cress | cytosol | 51.29 | 57.07 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 55.17 | 55.05 |
| AT3G03030.1 | Thale cress | cytosol | 52.59 | 51.48 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 23.71 | 51.4 |
| AT3G58890.1 | Thale cress | extracellular | 32.11 | 50.85 |
| AT3G58930.1 | Thale cress | cytosol | 52.59 | 50.62 |
| AT5G38391.1 | Thale cress | cytosol | 19.4 | 50.56 |
| AT3G03040.1 | Thale cress | cytosol | 50.86 | 50.0 |
| AT3G58860.1 | Thale cress | cytosol | 48.71 | 49.45 |
| AT3G58880.1 | Thale cress | cytosol | 46.55 | 47.58 |
| AT4G14096.2 | Thale cress | cytosol | 39.87 | 39.53 |
| AT3G59250.1 | Thale cress | cytosol | 35.99 | 39.29 |
| AT4G14103.2 | Thale cress | cytosol | 37.28 | 39.05 |
| AT3G59230.1 | Thale cress | cytosol | 40.52 | 38.29 |
| AT1G58310.1 | Thale cress | cytosol | 41.16 | 37.82 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 39.44 | 37.81 |
| AT2G42730.1 | Thale cress | cytosol | 36.21 | 36.76 |
| AT3G59170.1 | Thale cress | cytosol | 37.07 | 36.36 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 34.7 | 36.34 |
| AT3G59200.1 | Thale cress | cytosol | 40.3 | 35.96 |
| AT3G59160.1 | Thale cress | cytosol | 35.56 | 35.56 |
| AT3G58940.1 | Thale cress | cytosol | 47.2 | 35.44 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 38.15 | 34.1 |
| AT3G59240.1 | Thale cress | cytosol | 36.85 | 33.93 |
| AT3G59270.1 | Thale cress | cytosol | 23.92 | 33.13 |
| AT3G49150.1 | Thale cress | cytosol | 33.19 | 32.98 |
| AT3G59180.1 | Thale cress | plasma membrane | 32.97 | 32.21 |
| AT5G41840.1 | Thale cress | cytosol | 37.28 | 32.04 |
| AT5G41630.1 | Thale cress | cytosol | 31.25 | 31.87 |
| AT4G00320.1 | Thale cress | cytosol | 34.7 | 31.76 |
| AT5G41830.2 | Thale cress | cytosol | 34.7 | 31.32 |
| AT3G59150.1 | Thale cress | cytosol | 31.68 | 30.95 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 30.82 | 26.73 |
| AT5G35926.2 | Thale cress | nucleus | 24.57 | 26.33 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 22.2 | 25.06 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:827030 | UniProt:A0A1P8B401 | ProteinID:AEE83351.2 | ProteinID:ANM66291.1 |
| ArrayExpress:AT4G13960 | EnsemblPlantsGene:AT4G13960 | RefSeq:AT4G13960 | TAIR:AT4G13960 | RefSeq:AT4G13960-TAIR-G | EnsemblPlants:AT4G13960.2 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | RefSeq:NP_001319927.1 | RefSeq:NP_001328197.1 |
| PFAM:PF00646 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | SMART:SM00256 | SMART:SM00579 |
| SUPFAM:SSF52058 | SUPFAM:SSF81383 | UniParc:UPI000848539C | : | : | : |
Description
F-box/RNI-like superfamily protein [Source:TAIR;Acc:AT4G13960]
Coordinates
chr4:-:8060565..8063052
Molecular Weight (calculated)
53045.9 Da
IEP (calculated)
7.264
GRAVY (calculated)
0.102
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHVSSLPDE VLYHILSFLT TKEAALTSIL SKRWRNLFTF VPNLDIDDSV FLHPQEGKED RYEIQKSFMK FVDRVLALQG NSPIKKLSLK LRTGFDSHRV
101: DGWISNALAR GVTELDLLII LYTADYYLLS SKYFRNLVTL KLNSVRVDWL AAGDIFLPML KTLVLHSVRL CVDKYFFSAL PALEELVLVS VNWGGKDVNV
201: SNASLKILTV NYNICLGTFS VDTPSLVYFC FTEYVAIDYP VVIMQNLFEA RISLLVTQDQ IERARAPNID WVEDDVVLRL VNMEKLIKGI RNVQYMYLSP
301: NTLEVLSLCC ESMPVFNNLK SLTLKSHKSR GWQAMPVLLR NCPHLETLVL EGILHHVTDK CGYACDCVSR EEKGCSLTSC PVKVLEIKGF RGTIKEMHMI
401: KHFVNYFPCL METNIYIEES GPPKLRVPQV CEFIAEMMEH YGKSSSFNVQ LLVGGYLYKK WTAQ
101: DGWISNALAR GVTELDLLII LYTADYYLLS SKYFRNLVTL KLNSVRVDWL AAGDIFLPML KTLVLHSVRL CVDKYFFSAL PALEELVLVS VNWGGKDVNV
201: SNASLKILTV NYNICLGTFS VDTPSLVYFC FTEYVAIDYP VVIMQNLFEA RISLLVTQDQ IERARAPNID WVEDDVVLRL VNMEKLIKGI RNVQYMYLSP
301: NTLEVLSLCC ESMPVFNNLK SLTLKSHKSR GWQAMPVLLR NCPHLETLVL EGILHHVTDK CGYACDCVSR EEKGCSLTSC PVKVLEIKGF RGTIKEMHMI
401: KHFVNYFPCL METNIYIEES GPPKLRVPQV CEFIAEMMEH YGKSSSFNVQ LLVGGYLYKK WTAQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.