Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G58930.1 | Thale cress | cytosol | 54.21 | 69.5 |
| CDX84742 | Canola | cytosol | 46.44 | 63.08 |
| CDX76838 | Canola | cytosol | 46.12 | 62.09 |
| CDY34798 | Canola | peroxisome | 45.95 | 61.87 |
| CDY65456 | Canola | peroxisome | 46.44 | 58.93 |
| AT3G03040.1 | Thale cress | cytosol | 41.26 | 54.03 |
| AT3G03030.1 | Thale cress | cytosol | 40.78 | 53.16 |
| AT3G58950.1 | Thale cress | cytosol | 35.76 | 53.0 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 38.67 | 51.4 |
| AT5G38386.2 | Thale cress | cytosol | 32.85 | 50.37 |
| AT3G59000.1 | Thale cress | cytosol | 39.32 | 49.49 |
| AT3G58820.1 | Thale cress | cytosol | 33.01 | 49.39 |
| AT3G58860.1 | Thale cress | cytosol | 35.92 | 48.58 |
| AT5G38390.1 | Thale cress | vacuole | 35.76 | 48.46 |
| AT1G52650.1 | Thale cress | cytosol | 36.08 | 47.96 |
| AT5G38392.1 | Thale cress | cytosol | 16.83 | 47.93 |
| AT5G38396.1 | Thale cress | cytosol | 35.6 | 47.62 |
| AT3G58890.1 | Thale cress | extracellular | 22.49 | 47.44 |
| AT4G13960.2 | Thale cress | cytosol | 35.44 | 47.2 |
| AT3G58880.1 | Thale cress | cytosol | 33.17 | 45.15 |
| CDX89484 | Canola | cytosol | 44.82 | 44.61 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 14.24 | 41.12 |
| AT5G38391.1 | Thale cress | cytosol | 11.49 | 39.89 |
| AT4G14096.2 | Thale cress | cytosol | 29.29 | 38.68 |
| AT3G59250.1 | Thale cress | cytosol | 25.57 | 37.18 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 27.99 | 35.74 |
| AT4G14103.2 | Thale cress | cytosol | 25.4 | 35.44 |
| AT3G59200.1 | Thale cress | cytosol | 28.48 | 33.85 |
| AT3G49150.1 | Thale cress | cytosol | 25.4 | 33.62 |
| AT3G59230.1 | Thale cress | cytosol | 26.54 | 33.4 |
| AT1G58310.1 | Thale cress | cytosol | 27.18 | 33.27 |
| AT2G42730.1 | Thale cress | cytosol | 24.43 | 33.04 |
| AT3G59240.1 | Thale cress | cytosol | 26.7 | 32.74 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 23.3 | 32.51 |
| AT3G59170.1 | Thale cress | cytosol | 24.76 | 32.35 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 27.02 | 32.18 |
| AT4G00320.1 | Thale cress | cytosol | 25.73 | 31.36 |
| AT3G59160.1 | Thale cress | cytosol | 23.46 | 31.25 |
| AT5G41630.1 | Thale cress | cytosol | 22.98 | 31.21 |
| AT5G41840.1 | Thale cress | cytosol | 27.02 | 30.93 |
| AT5G41830.2 | Thale cress | cytosol | 25.08 | 30.16 |
| AT3G59270.1 | Thale cress | cytosol | 16.18 | 29.85 |
| AT3G59150.1 | Thale cress | cytosol | 22.82 | 29.68 |
| AT3G59180.1 | Thale cress | plasma membrane | 22.33 | 29.05 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 22.98 | 26.54 |
| AT5G35926.2 | Thale cress | nucleus | 17.31 | 24.71 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 14.24 | 21.41 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825063 | ProteinID:AEE79852.1 | ProteinID:ANM65663.1 | ArrayExpress:AT3G58940 |
| EnsemblPlantsGene:AT3G58940 | RefSeq:AT3G58940 | TAIR:AT3G58940 | RefSeq:AT3G58940-TAIR-G | EnsemblPlants:AT3G58940.1 | TAIR:AT3G58940.1 |
| ProteinID:CAB88311.1 | ncoils:Coil | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| RefSeq:NP_001327613.1 | RefSeq:NP_191453.1 | PFAM:PF00646 | PO:PO:0000005 | PO:PO:0000293 | PANTHER:PTHR31639 |
| PANTHER:PTHR31639:SF6 | UniProt:Q9LXQ8 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000A9340 |
| SEG:seg | : | : | : | : | : |
Description
F-box/LRR-repeat protein At3g58940 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ8]
Coordinates
chr3:-:21780785..21783676
Molecular Weight (calculated)
70851.9 Da
IEP (calculated)
4.408
GRAVY (calculated)
-0.406
Length
618 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRVSNLPEE VRCHILSFLP TKHAALTSVL SKSWLNLWKF ETNLDIDDSD FLHPEEGKAE RDEIRQSFVE FVDGVLALQG DSPIEKFSLK CITGIHPDHV
101: NRWICNVLQR GVSDLYLFTD FSDEDTEEDG GYRLPQEMFV SRTLVKLKLR SEHCVNWWHW DIGASLPNLK SLNIDSDLIF FGEMEKFLSS FPVLEEVHMA
201: NMEWRELDET MSSASLTKLS IHGTGVEEFE HPKSISIDTP NLLYLNYSDL VAEDYPLDDE GDVVLQFCNV VKLINGIQNI QTLYLTEDTL EVLTMCCESM
301: PVFNNLKTLG LKSDEGRGWQ AVPALLRNCP HLEFLIIEGL LHSVTDKCGD ACDCISREDK GRSLISCPVK KLEVRGFRGT IREKEMIRHF LEYFPCLDEM
401: EIDAEENDST NFEVPRILKV VAYRLHDVVS TEIVGHWQSS AQSGGWSQTQ MDEMYYELAP RNKERIYDMF FFMRRASSTV PPPPPQEMSQ DYLQMQLEVA
501: DLKERQRDQE AKLADLKERL RAMLDMIVDQ NPIIASALRA REATNSEREK ASSGQEMTEK ERDYDALFDI IVEQNPMLAS AVRALRATDS ERAETSSNQE
601: MTELGQATAT YFPPREGE
101: NRWICNVLQR GVSDLYLFTD FSDEDTEEDG GYRLPQEMFV SRTLVKLKLR SEHCVNWWHW DIGASLPNLK SLNIDSDLIF FGEMEKFLSS FPVLEEVHMA
201: NMEWRELDET MSSASLTKLS IHGTGVEEFE HPKSISIDTP NLLYLNYSDL VAEDYPLDDE GDVVLQFCNV VKLINGIQNI QTLYLTEDTL EVLTMCCESM
301: PVFNNLKTLG LKSDEGRGWQ AVPALLRNCP HLEFLIIEGL LHSVTDKCGD ACDCISREDK GRSLISCPVK KLEVRGFRGT IREKEMIRHF LEYFPCLDEM
401: EIDAEENDST NFEVPRILKV VAYRLHDVVS TEIVGHWQSS AQSGGWSQTQ MDEMYYELAP RNKERIYDMF FFMRRASSTV PPPPPQEMSQ DYLQMQLEVA
501: DLKERQRDQE AKLADLKERL RAMLDMIVDQ NPIIASALRA REATNSEREK ASSGQEMTEK ERDYDALFDI IVEQNPMLAS AVRALRATDS ERAETSSNQE
601: MTELGQATAT YFPPREGE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.