Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00593 | Canola | cytosol | 57.55 | 71.27 |
| CDY67935 | Canola | cytosol | 68.49 | 70.65 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 57.77 | 56.77 |
| AT3G59000.1 | Thale cress | cytosol | 54.27 | 50.51 |
| AT3G58950.1 | Thale cress | cytosol | 45.95 | 50.36 |
| AT5G38386.2 | Thale cress | cytosol | 43.98 | 49.88 |
| AT3G58930.1 | Thale cress | cytosol | 52.3 | 49.59 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 22.98 | 49.07 |
| AT5G38390.1 | Thale cress | vacuole | 48.8 | 48.9 |
| AT4G13960.2 | Thale cress | cytosol | 49.45 | 48.71 |
| AT3G03040.1 | Thale cress | cytosol | 49.89 | 48.31 |
| AT3G58880.1 | Thale cress | cytosol | 47.48 | 47.8 |
| AT3G58820.1 | Thale cress | cytosol | 42.89 | 47.46 |
| AT5G38396.1 | Thale cress | cytosol | 47.92 | 47.4 |
| AT1G52650.1 | Thale cress | cytosol | 47.7 | 46.88 |
| AT3G03030.1 | Thale cress | cytosol | 48.36 | 46.62 |
| AT5G38392.1 | Thale cress | cytosol | 22.1 | 46.54 |
| AT5G38391.1 | Thale cress | cytosol | 17.94 | 46.07 |
| AT3G58890.1 | Thale cress | extracellular | 26.91 | 41.98 |
| AT4G14096.2 | Thale cress | cytosol | 40.92 | 39.96 |
| AT4G14103.2 | Thale cress | cytosol | 38.29 | 39.5 |
| AT3G59250.1 | Thale cress | cytosol | 35.67 | 38.35 |
| AT3G59200.1 | Thale cress | cytosol | 42.67 | 37.5 |
| AT1G58310.1 | Thale cress | cytosol | 41.36 | 37.43 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 39.61 | 37.4 |
| AT2G42730.1 | Thale cress | cytosol | 36.98 | 36.98 |
| AT3G58940.1 | Thale cress | cytosol | 48.58 | 35.92 |
| AT3G59230.1 | Thale cress | cytosol | 38.51 | 35.85 |
| AT3G59160.1 | Thale cress | cytosol | 36.32 | 35.78 |
| AT3G49150.1 | Thale cress | cytosol | 36.32 | 35.55 |
| AT3G59170.1 | Thale cress | cytosol | 36.76 | 35.52 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 34.35 | 35.44 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 40.04 | 35.26 |
| AT4G00320.1 | Thale cress | cytosol | 38.51 | 34.71 |
| AT3G59240.1 | Thale cress | cytosol | 37.86 | 34.33 |
| AT5G41630.1 | Thale cress | cytosol | 33.48 | 33.63 |
| AT5G41830.2 | Thale cress | cytosol | 37.64 | 33.46 |
| AT5G41840.1 | Thale cress | cytosol | 38.95 | 32.96 |
| AT3G59150.1 | Thale cress | cytosol | 32.39 | 31.16 |
| AT3G59270.1 | Thale cress | cytosol | 22.76 | 31.04 |
| AT3G59180.1 | Thale cress | plasma membrane | 31.95 | 30.74 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 30.85 | 26.36 |
| AT5G35926.2 | Thale cress | nucleus | 24.51 | 25.87 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 21.23 | 23.6 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825055 | ProteinID:AEE79841.1 | ArrayExpress:AT3G58860 | EnsemblPlantsGene:AT3G58860 |
| RefSeq:AT3G58860 | TAIR:AT3G58860 | RefSeq:AT3G58860-TAIR-G | EnsemblPlants:AT3G58860.1 | TAIR:AT3G58860.1 | ProteinID:CAB88303.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_191445.1 |
| PFAM:PF00646 | PFAM:PF07723 | PO:PO:0000084 | PO:PO:0007115 | PO:PO:0009025 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0025022 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q9LXR6 |
| SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000009E5F6 | SEG:seg | : |
Description
Putative F-box protein At3g58860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXR6]
Coordinates
chr3:-:21763720..21765306
Molecular Weight (calculated)
52497.0 Da
IEP (calculated)
5.235
GRAVY (calculated)
-0.041
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSEKMDLFS KLPDEVISHI LSSLPTKEAA STSVLAKKWR YLFAFVPSLD FNDSDFLHPQ EGKREKDGIL RSFMDFVDRV LALQGASPIK KFSLNVKTGV
101: DPDRVDRWIC NVLQRGVSHL ALFMDFEEEY SLPYEISVSK TLVELKTGYG VDLYLWDDDM FLPMLKTLVL ESVEFGRGQF QTLLPACPVL EELMLLNMEW
201: KDRNVILSSS SLKNLKITSE DGCLGTLSFD TPNLVFLDYY DYVAEDYPIV NLKNLVEVGI NLVLTADRIN RARDNVWNLI HGIQNAEIFH ISPVTFEVLS
301: LSCEAMPVFK NLTTLNIRTV MQQGWQAMPL LLKNCPNLET LYLGGLLHTV TNKCGDVCDC IPRKKKGRSL MACPVNKIQI QGFRGTIREV HMIKHFLDFC
401: PSLKEMEIIV ETKEPTLFEI PKWLEIVEDT LMQYNEMSSC TINYRVLAPL YWRWTRK
101: DPDRVDRWIC NVLQRGVSHL ALFMDFEEEY SLPYEISVSK TLVELKTGYG VDLYLWDDDM FLPMLKTLVL ESVEFGRGQF QTLLPACPVL EELMLLNMEW
201: KDRNVILSSS SLKNLKITSE DGCLGTLSFD TPNLVFLDYY DYVAEDYPIV NLKNLVEVGI NLVLTADRIN RARDNVWNLI HGIQNAEIFH ISPVTFEVLS
301: LSCEAMPVFK NLTTLNIRTV MQQGWQAMPL LLKNCPNLET LYLGGLLHTV TNKCGDVCDC IPRKKKGRSL MACPVNKIQI QGFRGTIREV HMIKHFLDFC
401: PSLKEMEIIV ETKEPTLFEI PKWLEIVEDT LMQYNEMSSC TINYRVLAPL YWRWTRK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.