Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38392.1 | Thale cress | cytosol | 34.2 | 72.81 |
| AT4G13960.2 | Thale cress | cytosol | 64.72 | 64.44 |
| AT5G38386.2 | Thale cress | cytosol | 55.84 | 64.02 |
| AT1G52650.1 | Thale cress | cytosol | 64.29 | 63.87 |
| AT5G38390.1 | Thale cress | vacuole | 61.9 | 62.72 |
| AT3G58820.1 | Thale cress | cytosol | 53.9 | 60.29 |
| AT3G59000.1 | Thale cress | cytosol | 63.42 | 59.67 |
| AT3G58890.1 | Thale cress | extracellular | 34.2 | 53.92 |
| AT3G58950.1 | Thale cress | cytosol | 48.05 | 53.24 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 53.03 | 52.69 |
| AT3G58930.1 | Thale cress | cytosol | 54.11 | 51.87 |
| AT3G03040.1 | Thale cress | cytosol | 52.6 | 51.48 |
| AT3G03030.1 | Thale cress | cytosol | 51.73 | 50.42 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 22.73 | 49.07 |
| AT5G38391.1 | Thale cress | cytosol | 18.83 | 48.88 |
| AT3G58860.1 | Thale cress | cytosol | 47.4 | 47.92 |
| AT3G58880.1 | Thale cress | cytosol | 46.1 | 46.92 |
| AT4G14096.2 | Thale cress | cytosol | 39.83 | 39.32 |
| AT3G59250.1 | Thale cress | cytosol | 35.28 | 38.35 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 36.36 | 37.92 |
| AT4G14103.2 | Thale cress | cytosol | 36.15 | 37.7 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 39.18 | 37.4 |
| AT3G59230.1 | Thale cress | cytosol | 39.61 | 37.27 |
| AT2G42730.1 | Thale cress | cytosol | 36.8 | 37.2 |
| AT3G59170.1 | Thale cress | cytosol | 37.45 | 36.58 |
| AT1G58310.1 | Thale cress | cytosol | 39.18 | 35.84 |
| AT3G59160.1 | Thale cress | cytosol | 35.93 | 35.78 |
| AT3G58940.1 | Thale cress | cytosol | 47.62 | 35.6 |
| AT3G59200.1 | Thale cress | cytosol | 39.83 | 35.38 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 38.53 | 34.3 |
| AT3G49150.1 | Thale cress | cytosol | 34.63 | 34.26 |
| AT5G41840.1 | Thale cress | cytosol | 39.39 | 33.7 |
| AT3G59240.1 | Thale cress | cytosol | 36.15 | 33.13 |
| AT3G59270.1 | Thale cress | cytosol | 24.03 | 33.13 |
| AT4G00320.1 | Thale cress | cytosol | 35.5 | 32.35 |
| AT5G41830.2 | Thale cress | cytosol | 35.93 | 32.3 |
| AT3G59180.1 | Thale cress | plasma membrane | 33.12 | 32.21 |
| AT5G41630.1 | Thale cress | cytosol | 30.95 | 31.43 |
| AT3G59150.1 | Thale cress | cytosol | 32.03 | 31.16 |
| AT5G35926.2 | Thale cress | nucleus | 26.62 | 28.41 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 31.82 | 27.48 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 21.0 | 23.6 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:833826 | EMBL:AB005248 | ProteinID:AED94309.1 | ArrayExpress:AT5G38396 |
| EnsemblPlantsGene:AT5G38396 | RefSeq:AT5G38396 | TAIR:AT5G38396 | RefSeq:AT5G38396-TAIR-G | EnsemblPlants:AT5G38396.1 | TAIR:AT5G38396.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | RefSeq:NP_680364.1 | PFAM:PF00646 |
| PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q3E8L4 | SMART:SM00256 | SMART:SM00579 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0000162794 | : | : | : |
Description
F-box/LRR-repeat protein At5g38396 [Source:UniProtKB/Swiss-Prot;Acc:Q3E8L4]
Coordinates
chr5:+:15373094..15374726
Molecular Weight (calculated)
52753.1 Da
IEP (calculated)
6.297
GRAVY (calculated)
-0.044
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLRNIPDE LICHILSFLT TKEAALTSVL SKRWRNLLAF VSNLHIDDSI FLHPEEGKRD RNEIRQSFLD FVGRILALQG NCPVKKVSIK FLFKLDSDRV
101: DGWISNVLAR GVSELDLSID LCMDEYFLLS SKRFESKNLV RLKLHRLCIG QREKTVGWLA GEIFLPMLKT LELDYVGFYG DLLFLRALPA LEELVIVDAF
201: WFTTFTDVTV SNPSLKTLTM SSNIYSGSIS FDTPSLVYFS HFKYVAKDYP LVNMENLLEA RINLGVTEGQ IRRAREPNNN DEVVLRFPNV GKLMNGIRNV
301: QCLDLSANTL EMLSLSCESM PVFKNLKSLS IKSAENRGWQ AMPVLLRNCP HLETLVLEGL LHFVTDKCGD ACDCVSREEK GRSLTSCPVK TLEIKEFHGT
401: MEEMYMITHF LDYFPCLKEL KIYIEGNDHA QREVSEVIAE KIKLYNKSSS SNVQLMVSGY HE
101: DGWISNVLAR GVSELDLSID LCMDEYFLLS SKRFESKNLV RLKLHRLCIG QREKTVGWLA GEIFLPMLKT LELDYVGFYG DLLFLRALPA LEELVIVDAF
201: WFTTFTDVTV SNPSLKTLTM SSNIYSGSIS FDTPSLVYFS HFKYVAKDYP LVNMENLLEA RINLGVTEGQ IRRAREPNNN DEVVLRFPNV GKLMNGIRNV
301: QCLDLSANTL EMLSLSCESM PVFKNLKSLS IKSAENRGWQ AMPVLLRNCP HLETLVLEGL LHFVTDKCGD ACDCVSREEK GRSLTSCPVK TLEIKEFHGT
401: MEEMYMITHF LDYFPCLKEL KIYIEGNDHA QREVSEVIAE KIKLYNKSSS SNVQLMVSGY HE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.