Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98338 | Canola | cytosol | 59.56 | 60.44 |
| CDX95484 | Canola | cytosol | 49.64 | 58.24 |
| CDX67770 | Canola | cytosol | 55.21 | 58.16 |
| CDX98339 | Canola | cytosol, extracellular | 56.9 | 57.32 |
| AT4G13960.2 | Thale cress | cytosol | 63.68 | 56.68 |
| CDX67769 | Canola | cytosol | 56.9 | 56.35 |
| CDX67768 | Canola | cytosol | 54.96 | 55.64 |
| AT5G38386.2 | Thale cress | cytosol | 54.24 | 55.58 |
| AT1G52650.1 | Thale cress | cytosol | 61.74 | 54.84 |
| AT3G59000.1 | Thale cress | cytosol | 65.13 | 54.79 |
| AT5G38396.1 | Thale cress | cytosol | 60.29 | 53.9 |
| CDX98342 | Canola | cytosol | 51.09 | 53.55 |
| AT5G38390.1 | Thale cress | vacuole | 58.6 | 53.07 |
| AT5G38392.1 | Thale cress | cytosol | 26.63 | 50.69 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 56.66 | 50.32 |
| CDX98334 | Canola | golgi, mitochondrion, plasma membrane | 37.77 | 49.37 |
| AT3G58950.1 | Thale cress | cytosol | 48.67 | 48.2 |
| CDX98340 | Canola | cytosol | 25.42 | 47.95 |
| AT3G03040.1 | Thale cress | cytosol | 54.24 | 47.46 |
| AT3G03030.1 | Thale cress | cytosol | 53.51 | 46.62 |
| AT3G58930.1 | Thale cress | cytosol | 53.51 | 45.85 |
| AT3G58880.1 | Thale cress | cytosol | 48.67 | 44.27 |
| CDY18865 | Canola | plastid | 31.72 | 43.09 |
| AT3G58860.1 | Thale cress | cytosol | 47.46 | 42.89 |
| AT3G58890.1 | Thale cress | extracellular | 28.81 | 40.61 |
| AT5G38391.1 | Thale cress | cytosol | 17.43 | 40.45 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 18.16 | 35.05 |
| AT4G14096.2 | Thale cress | cytosol | 38.5 | 33.97 |
| AT4G14103.2 | Thale cress | cytosol | 35.59 | 33.18 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 38.74 | 33.06 |
| AT3G58940.1 | Thale cress | cytosol | 49.39 | 33.01 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 34.87 | 32.51 |
| AT3G59250.1 | Thale cress | cytosol | 33.41 | 32.47 |
| AT3G59170.1 | Thale cress | cytosol | 36.8 | 32.14 |
| AT1G58310.1 | Thale cress | cytosol | 39.23 | 32.08 |
| AT3G59230.1 | Thale cress | cytosol | 37.53 | 31.57 |
| AT2G42730.1 | Thale cress | cytosol | 33.9 | 30.63 |
| AT3G59160.1 | Thale cress | cytosol | 34.38 | 30.6 |
| AT3G49150.1 | Thale cress | cytosol | 33.9 | 29.98 |
| AT5G41840.1 | Thale cress | cytosol | 38.5 | 29.44 |
| AT3G59200.1 | Thale cress | cytosol | 36.8 | 29.23 |
| AT3G59270.1 | Thale cress | cytosol | 23.49 | 28.96 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 36.32 | 28.9 |
| AT4G00320.1 | Thale cress | cytosol | 35.35 | 28.8 |
| AT3G59240.1 | Thale cress | cytosol | 34.87 | 28.57 |
| AT3G59150.1 | Thale cress | cytosol | 32.45 | 28.21 |
| AT5G41630.1 | Thale cress | cytosol | 30.99 | 28.13 |
| AT5G41830.2 | Thale cress | cytosol | 34.62 | 27.82 |
| AT3G59180.1 | Thale cress | plasma membrane | 30.02 | 26.11 |
| AT5G35926.2 | Thale cress | nucleus | 24.21 | 23.09 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 29.3 | 22.62 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 20.58 | 20.68 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:825051 | ProteinID:AEE79836.1 | ArrayExpress:AT3G58820 | EnsemblPlantsGene:AT3G58820 |
| RefSeq:AT3G58820 | TAIR:AT3G58820 | RefSeq:AT3G58820-TAIR-G | EnsemblPlants:AT3G58820.1 | TAIR:AT3G58820.1 | ProteinID:CAB88299.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_191441.1 | PFAM:PF00646 | PO:PO:0000293 | PFscan:PS50181 |
| PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q9LXS0 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF81383 |
| UniParc:UPI0000048898 | SEG:seg | : | : | : | : |
Description
Putative F-box protein At3g58820 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS0]
Coordinates
chr3:+:21752533..21754681
Molecular Weight (calculated)
47337.7 Da
IEP (calculated)
4.804
GRAVY (calculated)
-0.010
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGVSSLPNE LLCHILSFLT TKEAALTSIL SKRWRNLIAF VPNLYIDDTV FLHPEEGKRD RPEIIQSFMD FVDRILALQG NYPIKKCSLK CLTEVDSVRV
101: DAWISNVLAR GVTDLDLLII LDCESDDNYR LSPKCLQSST LVSLKIDGGI DIARVDNFDI LLLALPALEE LALVDVIWKD EDDYPLVNMK NLFDARIIFM
201: LQLPGAREPD DDHWFDQNVA LRYSNVWKLF LGLQNVPNLY LSPDTLKVLS LYCESMPVFK NLKSLAIKSG KERGWQAIPV LLRNCPHLET LVIEGVLHNV
301: TDKCGDACDC ISREDKGRSL TSCPVKMLEI RGFRGTMKEM TMMKHFLDYF LCLKAMNIYV EENDPTELRF PEVSKCIMQM MEEYNKLSSC NVELLVTDYF
401: YFSEKWTAKG RIL
101: DAWISNVLAR GVTDLDLLII LDCESDDNYR LSPKCLQSST LVSLKIDGGI DIARVDNFDI LLLALPALEE LALVDVIWKD EDDYPLVNMK NLFDARIIFM
201: LQLPGAREPD DDHWFDQNVA LRYSNVWKLF LGLQNVPNLY LSPDTLKVLS LYCESMPVFK NLKSLAIKSG KERGWQAIPV LLRNCPHLET LVIEGVLHNV
301: TDKCGDACDC ISREDKGRSL TSCPVKMLEI RGFRGTMKEM TMMKHFLDYF LCLKAMNIYV EENDPTELRF PEVSKCIMQM MEEYNKLSSC NVELLVTDYF
401: YFSEKWTAKG RIL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.