Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98334 | Canola | golgi, mitochondrion, plasma membrane | 51.99 | 57.91 |
| CDX98340 | Canola | cytosol | 35.8 | 57.53 |
| CDX98338 | Canola | cytosol | 65.06 | 56.27 |
| CDX98339 | Canola | cytosol, extracellular | 63.64 | 54.63 |
| CDX67768 | Canola | cytosol | 62.78 | 54.17 |
| CDX67770 | Canola | cytosol | 58.81 | 52.81 |
| CDX67769 | Canola | cytosol | 62.22 | 52.52 |
| CDX98342 | Canola | cytosol | 55.97 | 50.0 |
| AT3G58820.1 | Thale cress | cytosol | 58.24 | 49.64 |
| CDY18865 | Canola | plastid | 41.19 | 47.7 |
| CDY65605 | Canola | cytosol | 34.66 | 44.04 |
| CDY58541 | Canola | cytosol | 50.28 | 38.73 |
| CDY34798 | Canola | peroxisome | 48.3 | 37.04 |
| CDY67935 | Canola | cytosol | 46.59 | 37.02 |
| CDY00593 | Canola | cytosol | 38.64 | 36.86 |
| CDY65456 | Canola | peroxisome | 50.85 | 36.76 |
| CDX84742 | Canola | cytosol | 47.44 | 36.7 |
| CDX76838 | Canola | cytosol | 47.16 | 36.17 |
| CDY65604 | Canola | cytosol | 49.72 | 36.16 |
| CDY49258 | Canola | cytosol | 48.86 | 36.06 |
| CDY29185 | Canola | cytosol | 42.61 | 35.13 |
| CDY50412 | Canola | cytosol, nucleus, peroxisome | 39.2 | 31.15 |
| CDX89484 | Canola | cytosol | 54.26 | 30.76 |
| CDX67785 | Canola | cytosol | 16.76 | 30.73 |
| CDY29195 | Canola | cytosol | 44.03 | 28.76 |
| CDX98355 | Canola | cytosol | 33.81 | 28.2 |
| CDX67783 | Canola | cytosol | 34.09 | 28.1 |
| CDX98354 | Canola | cytosol | 33.81 | 27.93 |
| CDY29197 | Canola | cytosol | 45.45 | 27.83 |
| CDY07837 | Canola | cytosol | 42.05 | 27.21 |
| CDY07822 | Canola | cytosol | 44.89 | 26.69 |
| CDX67782 | Canola | cytosol | 32.67 | 26.38 |
| CDY29196 | Canola | cytosol | 41.19 | 26.36 |
| CDY07824 | Canola | cytosol | 40.34 | 25.91 |
| CDX98353 | Canola | cytosol | 31.53 | 25.46 |
| CDX67786 | Canola | cytosol | 12.5 | 24.72 |
| CDY59410 | Canola | cytosol | 34.94 | 24.31 |
| CDY33289 | Canola | cytosol | 34.66 | 24.11 |
| CDY57500 | Canola | cytosol | 32.1 | 23.84 |
| CDX71909 | Canola | cytosol | 32.95 | 22.7 |
| CDX89015 | Canola | cytosol | 30.11 | 22.36 |
| CDX67788 | Canola | cytosol | 20.17 | 21.91 |
| CDY00610 | Canola | mitochondrion | 31.53 | 21.14 |
| CDX98357 | Canola | cytosol | 20.74 | 21.1 |
| CDY06017 | Canola | nucleus | 34.38 | 20.9 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 21.59 | 18.49 |
| CDX98352 | Canola | cytosol, nucleus, plasma membrane | 30.4 | 14.1 |
| CDX67781 | Canola | cytosol | 30.97 | 13.92 |
| CDY06019 | Canola | cytosol | 32.67 | 13.28 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX95484 | ProteinID:CDX95484 | ProteinID:CDX95484.1 | InterPro:F-box-like_dom_sf |
| InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00101273001 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | PFAM:PF08387 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | SMART:SM00579 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI0004EEE1C5 | SEG:seg | : | : | : |
Description
BnaC01g33760D
Coordinates
chrLK031889:-:604801..606365
Molecular Weight (calculated)
40113.5 Da
IEP (calculated)
4.571
GRAVY (calculated)
-0.047
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRVSNLPDE VLCHILSFLT TKEAALTSIL AKSALARGVS DLDLAIILDY DEDEDEDDNY YQLSPKCFEC STLFETLLRA LPSLEELQLV EVMWKDMYVN
101: VTVKSASVKT LTIKLNDCLS ALSFDTPSLL HLVYYGFVAS DFPVVNMEKL FDARIIFCLS EDQLKRLRDP DHACNVWKLF HGIRNVPNLD LLPDTLEVIF
201: NNLKSLSIKS DKDRGWQAMP ALLRNCPHLE ILAIEGLVHH VTDECGDACD CVSREGKGLS LTVCQVKELE IQGFRGTMKE MAMIKHFLDY FPCLKEMEVY
301: VEENDPTQLG NREISKLVQE ILELYSKLSG CNVQLLVSDY LEQKWLKNRK IS
101: VTVKSASVKT LTIKLNDCLS ALSFDTPSLL HLVYYGFVAS DFPVVNMEKL FDARIIFCLS EDQLKRLRDP DHACNVWKLF HGIRNVPNLD LLPDTLEVIF
201: NNLKSLSIKS DKDRGWQAMP ALLRNCPHLE ILAIEGLVHH VTDECGDACD CVSREGKGLS LTVCQVKELE IQGFRGTMKE MAMIKHFLDY FPCLKEMEVY
301: VEENDPTQLG NREISKLVQE ILELYSKLSG CNVQLLVSDY LEQKWLKNRK IS
001: MDHVSSLPEG VLCNIFSFLT TKEAALTSIL CKRWRNLLAF VPNLVIDDSV FLHPEEGKEE RYEIQQSFME FVDRVLALQG NSPIKKFSLK FRTDFASHRV
101: NAWISNVLAR GVSELDVLVI LYGAEFLPLS PKCFKSRNLV TLKINSLGID WLAGDIFLPM LKTLVLHSVK LCVDKFFFRA LPALEELVLF AVSWRDRDVT
201: VSNASIKTLT IKFNYYLGTL SLDTPSLVSF CFSDHVAKDY PLAKMEKLSE ARISLLVTEY QIERARAPNI YWVEDDVVLR LVNVGKLMKG IRNVQYLNLS
301: PNTLEVLSKC CESMPLFNNL KSLTIESNER RGWQAMPVLL RNCPHLETLV LEGLLHHVTE KCRNACDCVS QEEKGRSLTS CQVKVLEIKG FQGTTKEMHT
401: IKHFLEHFPC LREIKIHMEE NGPTQLRVPE VSQYIAEMME HYEKSSSCNV QLLVGGYLCK KWTTQ
101: NAWISNVLAR GVSELDVLVI LYGAEFLPLS PKCFKSRNLV TLKINSLGID WLAGDIFLPM LKTLVLHSVK LCVDKFFFRA LPALEELVLF AVSWRDRDVT
201: VSNASIKTLT IKFNYYLGTL SLDTPSLVSF CFSDHVAKDY PLAKMEKLSE ARISLLVTEY QIERARAPNI YWVEDDVVLR LVNVGKLMKG IRNVQYLNLS
301: PNTLEVLSKC CESMPLFNNL KSLTIESNER RGWQAMPVLL RNCPHLETLV LEGLLHHVTE KCRNACDCVS QEEKGRSLTS CQVKVLEIKG FQGTTKEMHT
401: IKHFLEHFPC LREIKIHMEE NGPTQLRVPE VSQYIAEMME HYEKSSSCNV QLLVGGYLCK KWTTQ
Arabidopsis Description
F-box/LRR-repeat protein At1g52650 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.