CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49258	Canola	cytosol	89.05	90.36
CDY29185	Canola	cytosol	52.89	59.95
AT3G58950.1	Thale cress	cytosol	50.0	58.03
CDX84742	Canola	cytosol	51.03	54.29
AT3G58890.1	Thale cress	extracellular	32.64	53.92
CDY58541	Canola	cytosol	50.62	53.61
CDY65456	Canola	peroxisome	52.89	52.57
CDY34798	Canola	peroxisome	49.79	52.51
CDX76838	Canola	cytosol	49.79	52.51
CDX98338	Canola	cytosol	43.8	52.09
CDX98339	Canola	cytosol, extracellular	43.39	51.22
CDX98342	Canola	cytosol	41.53	51.02
CDX67769	Canola	cytosol	43.8	50.84
CDX95484	Canola	cytosol	36.16	49.72
CDX67768	Canola	cytosol	41.74	49.51
CDY50412	Canola	cytosol, nucleus, peroxisome	45.04	49.21
CDY29195	Canola	cytosol	54.55	48.98
CDX67770	Canola	cytosol	39.46	48.72
CDY65605	Canola	cytosol	27.69	48.38
CDY29197	Canola	cytosol	54.96	46.26
CDX98340	Canola	cytosol	20.87	46.12
CDY00593	Canola	cytosol	35.12	46.07
CDY67935	Canola	cytosol	42.15	46.05
CDY29196	Canola	cytosol	52.07	45.82
CDX98334	Canola	golgi, mitochondrion, plasma membrane	29.75	45.57
CDY07822	Canola	cytosol	54.96	44.93
CDY07837	Canola	cytosol	50.41	44.85
CDY07824	Canola	cytosol	50.21	44.34
CDX67786	Canola	cytosol	15.29	41.57
CDY18865	Canola	plastid	26.03	41.45
CDX89484	Canola	cytosol	52.27	40.74
CDX98355	Canola	cytosol	33.06	37.91
CDX98353	Canola	cytosol	33.88	37.61
CDX67782	Canola	cytosol	33.47	37.16
CDX67783	Canola	cytosol	32.44	36.77
CDX98354	Canola	cytosol	32.02	36.38
CDY57500	Canola	cytosol	34.92	35.65
CDY59410	Canola	cytosol	36.78	35.18
CDY33289	Canola	cytosol	36.57	34.98
CDX71909	Canola	cytosol	34.71	32.88
CDX89015	Canola	cytosol	32.02	32.7
CDX67785	Canola	cytosol	12.81	32.29
CDX98357	Canola	cytosol	22.31	31.21
CDX67788	Canola	cytosol	20.87	31.17
CDY06017	Canola	nucleus	37.19	31.09
CDY00610	Canola	mitochondrion	33.06	30.48
GSMUA_Achr2P13780_001	Banana	cytosol	20.87	24.57
CDX67781	Canola	cytosol	31.82	19.67
CDX98352	Canola	cytosol, nucleus, plasma membrane	30.58	19.5
CDY06019	Canola	cytosol	34.09	19.05

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078JFY0	EnsemblPlants:CDY65604	ProteinID:CDY65604	ProteinID:CDY65604.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00046904001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE3503

Description

BnaCnng47890DBnaCnng47890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFY0]

Coordinates

chrLK034858:+:849..2885

Molecular Weight (calculated)

54992.2 Da

IEP (calculated)

4.500

GRAVY (calculated)

-0.078

Length

484 amino acids

Sequence
(BLAST)

001: MFVETMDLVS SLPEEVLCHI LSFMSTKEAA LTSVLSKRWL SLWTLVPNLD VDDSVFLHPE EGKREREGIL QSFMDFVERV LALQGDSPIK RFSLKCKTGI
101: DPDRVNLWIR NVLRRGVSDL ELYLDFPRFG SSDNDDEDYQ LPWEMFESKT LVDLKLTSEF GVDWWRDQGT LLPMLKSLRI DSGVLVLLSD ELEQFVYALP
201: VVEELCLATM VWFDSDETVS SASLRKLTIY AKGFEDFGGD PKGFYFDTPS LVYLDYSDYV AADYPVVNLT SLAEARLNLL VKEDQVELIR AAAPNGEDDV
301: VIQRFRNVSK LMSGLINVEK LSLSADTLEV LSLSCDSMPV FNNLKSLNIK SHKERGWQAV PVLLRNCPHL ETIVFEGLVH HVTDDCGDAC GCISREDKGR
401: SLVSCPVKKI QIHGFKITVP EMKTIRHILE SLPCLKEMKI YAEDDDDDPI NLEVLKGYKE IEMAMKYYSQ LFKCDVSFVR PGSL

Best Arabidopsis Sequence Match ( AT3G03030.1 )
(BLAST)

001: MDLVSSLPDD VRCHILSFLT TKESALTSVL SKKWRNLFTL VPNLDLDDSE YLHPEETKWE REEILDSFLD FVERVLSLQG NGPIRRFSLR CESGVPPARL
101: NRWLCKVLQR GVADLELIID FEDGYLLPRE LFVSETLVNL RLKSEFGCIH WWPGAEGTFL PRLQSLDISS AMVFCDDKLQ KLLPCFPVIE ELRLVGMEWI
201: DSHVTVSCAT LTNQLLLSST GSRTSKNPKS VSFDTPNLLS LAYSDLVAED YPLVNMKSLF KARIILGVDD DQIARMRAPT NYLSEDDVVR RFGNVVKLMK
301: GIQNVQQLHL HSDTLEVLSM CCESMPVFNN VKTLGIKSDY DRGWQAVPAL LRNCPHLETL TFEGLVHHVT DKCGDACDCI FRKDKGRSLK SCPVKVVEIK
401: EFRVTMKEMH LIEHFLDNFP CLKEMKIYRE EYDPSPFGND PQVDDLILDM IEEYKDIYSC NVQLLEPCDK WDEQ

Arabidopsis Description

F-box/LRR-repeat protein At3g03030 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8U4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.