CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98339	Canola	cytosol, extracellular	79.59	76.1
CDX98338	Canola	cytosol	70.41	67.81
CDX67768	Canola	cytosol	70.41	67.65
CDX67769	Canola	cytosol	71.94	67.63
CDX98342	Canola	cytosol	64.03	63.71
CDX98340	Canola	cytosol	33.93	60.73
CDX95484	Canola	cytosol	52.81	58.81
CDX98334	Canola	golgi, mitochondrion, plasma membrane	46.68	57.91
AT3G58820.1	Thale cress	cytosol	58.16	55.21
CDY18865	Canola	plastid	40.31	51.97
CDY58541	Canola	cytosol	51.02	43.76
CDY00593	Canola	cytosol	40.82	43.36
CDY65605	Canola	cytosol	29.59	41.88
CDY29185	Canola	cytosol	45.41	41.69
CDY65456	Canola	peroxisome	50.77	40.86
CDY67935	Canola	cytosol	46.17	40.86
CDX84742	Canola	cytosol	47.19	40.66
CDY34798	Canola	peroxisome	47.45	40.52
CDY49258	Canola	cytosol	48.98	40.25
CDX76838	Canola	cytosol	46.68	39.87
CDY65604	Canola	cytosol	48.72	39.46
CDY50412	Canola	cytosol, nucleus, peroxisome	42.35	37.47
CDY29195	Canola	cytosol	47.45	34.51
CDX89484	Canola	cytosol	53.32	33.66
CDX67785	Canola	cytosol	16.33	33.33
CDY07824	Canola	cytosol	46.17	33.03
CDX67782	Canola	cytosol	36.22	32.57
CDY29197	Canola	cytosol	46.94	32.0
CDY29196	Canola	cytosol	44.39	31.64
CDX98353	Canola	cytosol	34.69	31.19
CDX67783	Canola	cytosol	33.93	31.15
CDX98355	Canola	cytosol	33.16	30.81
CDY07822	Canola	cytosol	46.17	30.57
CDX98354	Canola	cytosol	33.16	30.52
CDX67786	Canola	cytosol	13.27	29.21
CDY07837	Canola	cytosol	39.54	28.49
CDY59410	Canola	cytosol	36.73	28.46
CDX98357	Canola	cytosol	25.0	28.32
CDY33289	Canola	cytosol	36.48	28.26
CDX67788	Canola	cytosol	23.21	28.09
CDX71909	Canola	cytosol	35.71	27.4
CDY57500	Canola	cytosol	32.91	27.22
CDX89015	Canola	cytosol	30.61	25.32
CDY00610	Canola	mitochondrion	32.65	24.38
CDY06017	Canola	nucleus	35.97	24.35
GSMUA_Achr2P13780_001	Banana	cytosol	21.68	20.68
CDY06019	Canola	cytosol	35.97	16.28
CDX67781	Canola	cytosol	29.08	14.56
CDX98352	Canola	cytosol, nucleus, plasma membrane	28.06	14.49

Protein Annotations

EnsemblPlants:CDX67770	EnsemblPlantsGene:GSBRNA2T00098960001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	PFAM:PF00646
ProteinID:CDX67770	ProteinID:CDX67770.1	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EEF83A
MapMan:35.1	:	:	:	:	:

Description

BnaA07g18100D

Coordinates

chrLK031787:-:2183274..2185140

Molecular Weight (calculated)

44116.8 Da

IEP (calculated)

6.658

GRAVY (calculated)

0.043

Length

392 amino acids

Sequence
(BLAST)

001: MDRVSILPDE VLCHILSFLT TKEAALTSIL AKSWRNLLAF VPSLTIDDSV EDIIQSFMAF VDRVLALQGN SPLNKFSLKC VTVVDTDRVD GWVSNALARG
101: GVSDLDLKII IPSDIGEFYK LSPKCFECNT LVSLKIHRGI DISLVADYTL KTLSFDAPSL LHFNYSGYAA LDYPVVNMGN LVDAQIDFFL SDSQLKQLRE
201: PDNDEDAHRY SKVWKLFHGI RYVGNLTLLP DTLEVLSMCS ESMPVFNNLK SLTIRSDEDR GWQAMPALLS NCPHLEALVI KGLVHRVTNK CGDVCDCISR
301: ENKGLSLTLC PVKVMKIHGF QGTKKEMAMM KHFLDYFLSL KEMRIYAEEN NGPTRLGNHE VCKRVLEMFQ LYNKLSSCNV KVKLMVGDVL CR

Best Arabidopsis Sequence Match ( AT3G58820.1 )
(BLAST)

001: MDGVSSLPNE LLCHILSFLT TKEAALTSIL SKRWRNLIAF VPNLYIDDTV FLHPEEGKRD RPEIIQSFMD FVDRILALQG NYPIKKCSLK CLTEVDSVRV
101: DAWISNVLAR GVTDLDLLII LDCESDDNYR LSPKCLQSST LVSLKIDGGI DIARVDNFDI LLLALPALEE LALVDVIWKD EDDYPLVNMK NLFDARIIFM
201: LQLPGAREPD DDHWFDQNVA LRYSNVWKLF LGLQNVPNLY LSPDTLKVLS LYCESMPVFK NLKSLAIKSG KERGWQAIPV LLRNCPHLET LVIEGVLHNV
301: TDKCGDACDC ISREDKGRSL TSCPVKMLEI RGFRGTMKEM TMMKHFLDYF LCLKAMNIYV EENDPTELRF PEVSKCIMQM MEEYNKLSSC NVELLVTDYF
401: YFSEKWTAKG RIL

Arabidopsis Description

Putative F-box protein At3g58820 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.