CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67769	Canola	cytosol	75.89	71.7
CDX98338	Canola	cytosol	71.32	69.04
CDX98334	Canola	golgi, mitochondrion, plasma membrane	52.79	65.82
CDX98339	Canola	cytosol, extracellular	68.02	65.37
CDX67770	Canola	cytosol	63.71	64.03
CDX67768	Canola	cytosol	65.99	63.73
CDX98340	Canola	cytosol	33.5	60.27
CDX95484	Canola	cytosol	50.0	55.97
AT3G58820.1	Thale cress	cytosol	53.55	51.09
CDY18865	Canola	plastid	37.56	48.68
CDY29185	Canola	cytosol	50.25	46.37
CDY00593	Canola	cytosol	40.86	43.63
CDY58541	Canola	cytosol	50.25	43.33
CDY65605	Canola	cytosol	30.46	43.32
CDY49258	Canola	cytosol	51.27	42.35
CDX84742	Canola	cytosol	48.48	41.98
CDY65604	Canola	cytosol	51.02	41.53
CDY67935	Canola	cytosol	46.45	41.31
CDY34798	Canola	peroxisome	47.72	40.96
CDX76838	Canola	cytosol	46.7	40.09
CDY65456	Canola	peroxisome	48.73	39.43
CDY50412	Canola	cytosol, nucleus, peroxisome	44.16	39.28
CDY29195	Canola	cytosol	50.51	36.92
CDY07824	Canola	cytosol	48.98	35.22
CDY29196	Canola	cytosol	48.22	34.55
CDY29197	Canola	cytosol	48.98	33.57
CDX67785	Canola	cytosol	16.24	33.33
CDX89484	Canola	cytosol	52.28	33.17
CDX67782	Canola	cytosol	35.53	32.11
CDY07822	Canola	cytosol	47.72	31.76
CDX98355	Canola	cytosol	33.76	31.52
CDX98354	Canola	cytosol	34.01	31.46
CDX67783	Canola	cytosol	34.01	31.38
CDX98353	Canola	cytosol	34.01	30.73
CDY07837	Canola	cytosol	41.37	29.96
CDX67788	Canola	cytosol	24.62	29.94
CDX67786	Canola	cytosol	13.45	29.78
CDY33289	Canola	cytosol	37.31	29.05
CDY59410	Canola	cytosol	37.06	28.85
CDX71909	Canola	cytosol	36.8	28.38
CDX98357	Canola	cytosol	24.87	28.32
CDX89015	Canola	cytosol	33.25	27.64
CDY57500	Canola	cytosol	32.74	27.22
CDY00610	Canola	mitochondrion	33.25	24.95
CDY06017	Canola	nucleus	36.04	24.52
GSMUA_Achr2P13780_001	Banana	cytosol	19.8	18.98
CDY06019	Canola	cytosol	36.29	16.51
CDX98352	Canola	cytosol, nucleus, plasma membrane	29.19	15.15
CDX67781	Canola	cytosol	29.95	15.07

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX98342	ProteinID:CDX98342	ProteinID:CDX98342.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00105893001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFAM:PF08387
PFscan:PS50181	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EED8F2	:	:	:	:	:

Description

BnaC06g17030D

Coordinates

chrLK031904:-:688296..689864

Molecular Weight (calculated)

44720.7 Da

IEP (calculated)

5.117

GRAVY (calculated)

0.082

Length

394 amino acids

Sequence
(BLAST)

001: MDRVSNLPDE VLCHVLSFLT TKEAALTSIL AKRWRNLLAF VPCLAIYDSM FLHPEEGKQD GDDIKQSFMD FVDRVLALQG NSPLNKFSLM CANDVDTDRV
101: DGWISNVLAR GSVSDLDLQI IILTLKIHGG IDVTLVAGRI FLPMLKTLVL DWAMACPNEN WLWLMMSVSN ASLKTLTIKL DECLNTLSFD TPSLVQFEYS
201: GYVASDYQLV TMGNVIMTKM RLDMWKLFHG IRNVHHLSLL PNTLEGLSMC SELMPVFNNL KSLTIWSDED RGWQAVPAFL RNCPHLETLV IKGLVHHVTD
301: KCGDVCDCIS REDKGLSLTV CPVKEMKMKI HGFQGTMEEM AMIKHFLEYF QCLKEMEVYA EENNNPTQLG GNQRVLEMFE LYNKLSSCNV QLFI

Best Arabidopsis Sequence Match ( AT1G52650.1 )
(BLAST)

001: MDHVSSLPEG VLCNIFSFLT TKEAALTSIL CKRWRNLLAF VPNLVIDDSV FLHPEEGKEE RYEIQQSFME FVDRVLALQG NSPIKKFSLK FRTDFASHRV
101: NAWISNVLAR GVSELDVLVI LYGAEFLPLS PKCFKSRNLV TLKINSLGID WLAGDIFLPM LKTLVLHSVK LCVDKFFFRA LPALEELVLF AVSWRDRDVT
201: VSNASIKTLT IKFNYYLGTL SLDTPSLVSF CFSDHVAKDY PLAKMEKLSE ARISLLVTEY QIERARAPNI YWVEDDVVLR LVNVGKLMKG IRNVQYLNLS
301: PNTLEVLSKC CESMPLFNNL KSLTIESNER RGWQAMPVLL RNCPHLETLV LEGLLHHVTE KCRNACDCVS QEEKGRSLTS CQVKVLEIKG FQGTTKEMHT
401: IKHFLEHFPC LREIKIHMEE NGPTQLRVPE VSQYIAEMME HYEKSSSCNV QLLVGGYLCK KWTTQ

Arabidopsis Description

F-box/LRR-repeat protein At1g52650 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.