CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59150.1	CDX73678	AT3G51920.1	17360592
AT3G59150.1	CDX95314	AT3G51920.1	17360592
AT3G59150.1	CDY23174	AT3G51920.1	17360592
AT3G59150.1	CDY06478	AT4G14640.1	17360592
AT3G59150.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00610	Canola	mitochondrion	80.17	72.38
AT3G59150.1	Thale cress	cytosol	62.03	61.89
CDX98353	Canola	cytosol	31.65	34.4
CDX98338	Canola	cytosol	29.54	34.4
CDX98355	Canola	cytosol	30.59	34.36
CDX67768	Canola	cytosol	29.32	34.07
CDY29185	Canola	cytosol	30.59	33.96
CDX67782	Canola	cytosol	31.22	33.95
CDX98354	Canola	cytosol	30.38	33.8
CDX67783	Canola	cytosol	30.17	33.49
CDX98342	Canola	cytosol	27.64	33.25
CDX67786	Canola	cytosol	12.45	33.15
CDY49258	Canola	cytosol	32.7	32.49
CDY65604	Canola	cytosol	32.7	32.02
CDY59410	Canola	cytosol	34.18	32.02
CDY33289	Canola	cytosol	33.97	31.82
CDX67785	Canola	cytosol	12.87	31.77
CDX67769	Canola	cytosol	27.85	31.65
CDY18865	Canola	plastid	20.25	31.58
CDX98340	Canola	cytosol	14.56	31.51
CDY67935	Canola	cytosol	29.32	31.38
CDY58541	Canola	cytosol	30.17	31.29
CDY00593	Canola	cytosol	24.05	30.89
CDX84742	Canola	cytosol	29.54	30.77
CDX67770	Canola	cytosol	25.32	30.61
CDX71909	Canola	cytosol	32.91	30.53
CDX98339	Canola	cytosol, extracellular	26.37	30.49
CDY57500	Canola	cytosol	30.38	30.38
CDX95484	Canola	cytosol	22.36	30.11
CDX76838	Canola	cytosol	29.11	30.07
CDY34798	Canola	peroxisome	29.11	30.07
CDY65456	Canola	peroxisome	30.59	29.77
CDY50412	Canola	cytosol, nucleus, peroxisome	27.43	29.35
CDX98334	Canola	golgi, mitochondrion, plasma membrane	18.78	28.16
CDY65605	Canola	cytosol	16.03	27.44
CDX98357	Canola	cytosol	19.62	26.88
CDY06017	Canola	nucleus	32.28	26.42
CDY29197	Canola	cytosol	31.22	25.74
CDX67788	Canola	cytosol	17.51	25.62
CDY29195	Canola	cytosol	29.11	25.6
CDY07824	Canola	cytosol	28.27	24.45
CDY07822	Canola	cytosol	30.17	24.16
CDY29196	Canola	cytosol	27.85	24.0
CDX89484	Canola	cytosol	30.38	23.19
CDY07837	Canola	cytosol	25.95	22.61
GSMUA_Achr2P13780_001	Banana	cytosol	18.78	21.65
CDX67781	Canola	cytosol	29.75	18.01
CDX98352	Canola	cytosol, nucleus, plasma membrane	28.48	17.79
CDY06019	Canola	cytosol	32.49	17.78

Protein Annotations

EnsemblPlants:CDX89015	EnsemblPlantsGene:GSBRNA2T00149129001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	PFscan:PS50181
ProteinID:CDX89015	ProteinID:CDX89015.1	SEG:seg	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EE85B4	MapMan:35.1	:	:	:	:

Description

BnaA04g01710D

Coordinates

chrLK031857:+:532873..538211

Molecular Weight (calculated)

53538.2 Da

IEP (calculated)

9.891

GRAVY (calculated)

-0.157

Length

474 amino acids

Sequence
(BLAST)

001: MEGYKKANPS SRDVISKLPD NILCRILSFL TTKEAALTLL LSKRWSNLLQ LVPILDFDDS VSNHRKVGPV KLVAFKNFVE SVLSRRFNNS SSPVKKVSLR
101: LSNEYIERRI VKRWIQQVID HGALELTLRL DYNSNFTMPF RVLTSKALVH LRIGSRIRLT QPRPNSVSPM LNSLVLDSVL FGSFTYFKPG FEAILSAFPN
201: LQNLRVHESN KWYYWDGSVS SPTLKRFVYR RDDDTSGPKP CVTFDTPGLV CLEYSDVVAD KYENLRLDSL VEARLDLLLT AGQIMRKKAP DNVGFVPGDV
301: STLFKGIRNV KILCLSPDAL DTLYYRGGEI PVFNNLISLS LGSDRPHGSP YIFKKLLPSF LLKAPNLQTL IIKGLGHYVK KGWEVGWHLR LSLDDMYDAL
401: SSSGVKVLQI NGYEGTGEEL SHMERFLGTL PRLEMVRVTH KGGDDGERCR LVNDLLCLPR ASPKCKVQVM KESA

Best Arabidopsis Sequence Match ( AT3G59150.1 )
(BLAST)

001: MEANKKAKPS YGDVISNLPN DLLCRILSYL STKEAALTSI LSKRWSNLLL SIPILDFDDS VLLKPQKGQR KNVFFKAFVD RLLSQRVETS SHVQRVSLKC
101: RQGGVEPDCV IKWILTTVRD LGVLDLSLCI DFGIFHLPFN VFRSKTLVKL RIGTMIRLSQ FPSDVVSPTL NSLVLDLVEF RDGDKVEFRQ ILLAFPSLQS
201: LRVHESNKWK FWNGSASSRT LKSLVYRSDD DSSAPKPCVS FDTPSLVYLD YSDMVADKYE NLKFDSLVEA RLDLHLTAFQ IMRKPNNIGI VSGDVTTLFK
301: GIRNVKILCL SPDALEALYY RGEKIPMFNN LITLSLGSDK PHGSPFIFWK LLPSLLNNSL KLETLIIKGL VHYVAEGWEG LSPMTPMSRL CFSWDTVSDS
401: LSSSAMKVLE ISGYKGTWQE LNQMKRFLGN LSRLEVVRVY HKAMDDKERI NVMFDLFLLP KVSSECDIQV MKETA

Arabidopsis Description

F-box protein At3g59150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.