CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67935	Canola	cytosol	94.58	78.78
AT3G58860.1	Thale cress	cytosol	71.27	57.55
CDX98342	Canola	cytosol	43.63	40.86
CDX67770	Canola	cytosol	43.36	40.82
CDX98338	Canola	cytosol	44.72	40.54
CDX98339	Canola	cytosol, extracellular	43.9	39.51
CDX67768	Canola	cytosol	43.63	39.46
CDX67769	Canola	cytosol	44.44	39.33
CDY58541	Canola	cytosol	47.97	38.73
CDX95484	Canola	cytosol	36.86	38.64
CDX67786	Canola	cytosol	18.43	38.2
CDX84742	Canola	cytosol	46.88	38.02
CDX76838	Canola	cytosol	45.53	36.6
CDY34798	Canola	peroxisome	45.53	36.6
CDY49258	Canola	cytosol	46.88	36.27
CDY65456	Canola	peroxisome	47.43	35.93
CDY29185	Canola	cytosol	41.46	35.83
CDY65604	Canola	cytosol	46.07	35.12
CDY50412	Canola	cytosol, nucleus, peroxisome	40.92	34.09
CDX98334	Canola	golgi, mitochondrion, plasma membrane	29.0	33.86
CDY65605	Canola	cytosol	24.39	32.49
CDX67782	Canola	cytosol	37.94	32.11
CDX98340	Canola	cytosol	18.7	31.51
CDX98353	Canola	cytosol	36.86	31.19
CDY18865	Canola	plastid	24.93	30.26
CDX67783	Canola	cytosol	34.96	30.21
CDY57500	Canola	cytosol	38.48	29.96
CDX67785	Canola	cytosol	15.45	29.69
CDX98355	Canola	cytosol	33.6	29.38
CDX98354	Canola	cytosol	33.88	29.34
CDY07824	Canola	cytosol	42.28	28.47
CDY29195	Canola	cytosol	41.46	28.39
CDY29196	Canola	cytosol	42.28	28.36
CDX89484	Canola	cytosol	47.7	28.34
CDY29197	Canola	cytosol	42.82	27.48
CDY07837	Canola	cytosol	39.57	26.84
CDY06017	Canola	nucleus	41.73	26.6
CDY33289	Canola	cytosol	36.31	26.48
CDX71909	Canola	cytosol	36.59	26.42
CDY59410	Canola	cytosol	36.04	26.28
CDY07822	Canola	cytosol	42.01	26.18
CDX67788	Canola	cytosol	22.76	25.93
CDX98357	Canola	cytosol	23.04	24.57
CDX89015	Canola	cytosol	30.89	24.05
CDY00610	Canola	mitochondrion	32.52	22.86
GSMUA_Achr2P13780_001	Banana	cytosol	20.87	18.73
CDY06019	Canola	cytosol	37.13	15.82
CDX98352	Canola	cytosol, nucleus, plasma membrane	31.17	15.15
CDX67781	Canola	cytosol	31.98	15.07

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDY00593	ProteinID:CDY00593	ProteinID:CDY00593.1	InterPro:F-box-like_dom_sf
InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00110357001	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF07723	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE9525	:	:	:

Description

BnaC04g23320D

Coordinates

chrLK031920:-:524354..525860

Molecular Weight (calculated)

42324.9 Da

IEP (calculated)

6.347

GRAVY (calculated)

0.130

Length

369 amino acids

Sequence
(BLAST)

001: MDLFNKLPDP VVSHILSFLP TTKEAASTSV LAKRWRNLFA FVPNLNLDGD SKTFMDFVDR VLALQGDIPI KEFSLNAKTG VDPDRVDRWI CNVLRRGVTH
101: LDLFVEFDEE YSLPYEISVS KTLVELKTGY GVDFYAWDDD MFLPNLKNLI LVSVEFGRGQ FQTLLPACPV LEGLIVRGAR DNLVKLIHGI RNVKILYLTP
201: VTFEILSLCC ETMPVFENLT TLSIKSVMIQ GWQAMPVLLR SCPRLESLYI GELLHSITDA CGDVCVCLSK WNKGLSLMSC HVKKMRILGF RGTIREVHMI
301: KHFLDHLPSL KEMEIVVEEN EDTMFDIPKW LDIVGETLMH FNETSSCNVI FWMHAFLYRR LTRKWSPQV

Best Arabidopsis Sequence Match ( AT3G58860.1 )
(BLAST)

001: MDSEKMDLFS KLPDEVISHI LSSLPTKEAA STSVLAKKWR YLFAFVPSLD FNDSDFLHPQ EGKREKDGIL RSFMDFVDRV LALQGASPIK KFSLNVKTGV
101: DPDRVDRWIC NVLQRGVSHL ALFMDFEEEY SLPYEISVSK TLVELKTGYG VDLYLWDDDM FLPMLKTLVL ESVEFGRGQF QTLLPACPVL EELMLLNMEW
201: KDRNVILSSS SLKNLKITSE DGCLGTLSFD TPNLVFLDYY DYVAEDYPIV NLKNLVEVGI NLVLTADRIN RARDNVWNLI HGIQNAEIFH ISPVTFEVLS
301: LSCEAMPVFK NLTTLNIRTV MQQGWQAMPL LLKNCPNLET LYLGGLLHTV TNKCGDVCDC IPRKKKGRSL MACPVNKIQI QGFRGTIREV HMIKHFLDFC
401: PSLKEMEIIV ETKEPTLFEI PKWLEIVEDT LMQYNEMSSC TINYRVLAPL YWRWTRK

Arabidopsis Description

Putative F-box protein At3g58860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.