CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29197	Canola	cytosol	86.82	89.39
CDY29196	Canola	cytosol	78.72	84.73
CDY29185	Canola	cytosol	58.95	81.73
CDY07824	Canola	cytosol	73.82	79.74
CDY07837	Canola	cytosol	70.61	76.84
CDY29195	Canola	cytosol	69.26	76.07
AT3G58950.1	Thale cress	cytosol	40.88	58.03
AT3G58890.1	Thale cress	extracellular	27.7	55.97
CDY65604	Canola	cytosol	44.93	54.96
CDY49258	Canola	cytosol	44.26	54.93
CDX98340	Canola	cytosol	18.24	49.32
CDY65605	Canola	cytosol	22.97	49.1
CDY58541	Canola	cytosol	37.5	48.58
CDX98342	Canola	cytosol	31.76	47.72
CDX67768	Canola	cytosol	32.26	46.81
CDX98338	Canola	cytosol	31.93	46.44
CDX67770	Canola	cytosol	30.57	46.17
CDX67769	Canola	cytosol	32.09	45.56
CDX98339	Canola	cytosol, extracellular	31.42	45.37
CDX95484	Canola	cytosol	26.69	44.89
CDX76838	Canola	cytosol	34.63	44.66
CDY34798	Canola	peroxisome	34.46	44.44
CDX84742	Canola	cytosol	34.12	44.4
CDY65456	Canola	peroxisome	36.32	44.15
CDY50412	Canola	cytosol, nucleus, peroxisome	31.76	42.44
CDY00593	Canola	cytosol	26.18	42.01
CDY18865	Canola	plastid	21.45	41.78
CDX98334	Canola	golgi, mitochondrion, plasma membrane	22.3	41.77
CDY67935	Canola	cytosol	30.74	41.08
CDX67785	Canola	cytosol	12.16	37.5
CDX98355	Canola	cytosol	26.01	36.49
CDX67782	Canola	cytosol	26.01	35.32
CDX98353	Canola	cytosol	26.01	35.32
CDX89484	Canola	cytosol	36.82	35.1
CDX67783	Canola	cytosol	25.0	34.66
CDX98354	Canola	cytosol	24.83	34.51
CDY57500	Canola	cytosol	26.52	33.12
CDY59410	Canola	cytosol	27.2	31.82
CDY33289	Canola	cytosol	26.86	31.42
CDY06017	Canola	nucleus	29.73	30.4
CDX67786	Canola	cytosol	9.12	30.34
CDX89015	Canola	cytosol	24.16	30.17
CDX71909	Canola	cytosol	26.01	30.14
CDX98357	Canola	cytosol	17.57	30.06
CDX67788	Canola	cytosol	16.05	29.32
CDY00610	Canola	mitochondrion	24.66	27.81
GSMUA_Achr2P13780_001	Banana	cytosol	14.53	20.92
CDX98352	Canola	cytosol, nucleus, plasma membrane	25.17	19.63
CDX67781	Canola	cytosol	25.51	19.28
CDY06019	Canola	cytosol	26.18	17.9

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078F407	EnsemblPlants:CDY07822	ProteinID:CDY07822	ProteinID:CDY07822.1
ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00124968001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EDBAD9	SEG:seg	:	:	:

Description

BnaC03g48000DBnaC03g48000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F407]

Coordinates

chrLK031981:+:230353..232613

Molecular Weight (calculated)

67231.5 Da

IEP (calculated)

4.479

GRAVY (calculated)

-0.416

Length

592 amino acids

Sequence
(BLAST)

001: MDRIGSLPDE VLSHILSFLT TKEAALTSIL SKRWRNLFTL VPNLDIDDSR ERDGILRSFM DFVDRVLALQ GDTPINKFSL KCKTGIDTDR FGVDWWQGGT
101: NTFLPMLKTL TFESTWILLC DDLQEFLSGF PVLEEFYMAE IEWPQSDQSV SSESLSRLTI YAGGFEDFWN PKNISFDTPS LVYLEYSDFV AGDYPKVNLP
201: NLAEAVLILK VTRDQVDLIR APDDEDDVSL RLGNVWKLIS GLRNVNKLFF SAETLEVLSL CCESMPVFNN LKSLHIICDA DLGWQAMPAL LRNCPHLETL
301: ILKGLLHHVT DKCGDACDCI TREDKGRSLS SCPVKKLQIR GFGGTVREKE MIRHFLESFP CLDEMEVYAA GQNNDDDPTN VEVNRIYKII AYKVHAEEIS
401: TDTVLQSESM SQTQMEEISS QFTPRNNRNK YDFVYILHGS PPPPPPPQSE DYLKEQLDAA KTKLAELNEE YKERQRVHDA NEEYKERQRV HDAMFDRIVE
501: QYPMIASALK ARQAATDSEG SEASNDQEKK RDVEALLEIM ADLYPDFASA LRAMRGTDLE RGEPSRDQGE MAKLDQPTST AMAADLLPRD GH

Best Arabidopsis Sequence Match ( AT3G58940.2 )
(BLAST)

001: MDRVSNLPEE VRCHILSFLP TKHAALTSVL SKSWLNLWKF ETNLDIDDSD FLHPEEGKAE RDEIRQSFVE FVDGVLALQG DSPIEKFSLK CITGIHPDHV
101: NRWICNVLQR GVSDLYLFTD FSDEDTEEDG GYRLPQEMFV SRTLVKLKLR SEHCVNWWHW DIGASLPNLK SLNIDSDLIF FGEMEKFLSS FPVLEEVHMA
201: NMEWRELDET MSSASLTKLS IHGTGVEEFE HPKSISIDTP NLLYLNYSDL VAEDYPLDDE GDVVLQFCNV VKLINGIQNI QTLYLTEDTL EVLTMCCESM
301: PVFNNLKTLG LKSDEGRGWQ AVPALLRNCP HLEFLIIEGL LHSVTDKCGD ACDCISREDK GRSLISCPVK KLEVRGFRGT IREKEMIRHF LEYFPCLDEM
401: EIDAEENDST NFEVPRILKV VAYRLHDVVS TEIVGHWQSS AQSGGWSQTQ MDEMYYELAP RNKERIYDMF FFMRRASSTV PPPPPQEMSQ DYLQMQLEVA
501: DLKERQRDQE AKLADLKERL RAMLDMIVDQ NPIIASALRA REATNSEREK ASSGQEMTEK ERDYDALFDI IVEQNPMLAS AVRALRATDS ERAETSSNQE
601: MTELGQATAT YFPPREGE

Arabidopsis Description

F-box/LRR-repeat protein At3g58940 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.