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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • nucleus 1
  • peroxisome 2
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:peroxisome
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY01389
CDY29370
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G58930.1 CDY01389 AT2G25700.1 21798944
AT3G58930.1 CDY29370 AT2G25700.1 21798944
AT3G58930.1 CDY43408 AT2G25700.1 21798944
AT3G58930.1 CDY44209 AT2G25700.1 21798944
AT3G58930.1 CDY63159 AT2G25700.1 21798944
AT3G58930.1 CDY67544 AT2G25700.1 21798944
AT3G58930.1 CDY68971 AT2G25700.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76838 Canola cytosol 96.08 96.08
CDX84742 Canola cytosol 83.66 84.4
CDY65456 Canola peroxisome 85.62 80.7
AT3G58930.1 Thale cress cytosol 62.53 59.54
CDY49258 Canola cytosol 52.72 50.73
CDX89484 Canola cytosol 68.63 50.72
CDY58541 Canola cytosol 49.67 49.89
CDY65604 Canola cytosol 52.51 49.79
CDY29185 Canola cytosol 45.32 48.71
CDX98338 Canola cytosol 43.14 48.65
CDX95484 Canola cytosol 37.04 48.3
CDX98342 Canola cytosol 40.96 47.72
CDX67770 Canola cytosol 40.52 47.45
CDX67768 Canola cytosol 41.61 46.81
CDX67769 Canola cytosol 42.48 46.76
CDX98339 Canola cytosol, extracellular 41.39 46.34
AT3G58940.1 Thale cress cytosol 61.87 45.95
CDY00593 Canola cytosol 36.6 45.53
CDY65605 Canola cytosol 27.02 44.77
CDX98340 Canola cytosol 21.35 44.75
CDX98334 Canola golgi, mitochondrion, plasma membrane 30.28 43.99
CDY50412 Canola cytosol, nucleus, peroxisome 41.18 42.66
CDY67935 Canola cytosol 41.18 42.66
CDY18865 Canola plastid 26.8 40.46
CDX67786 Canola cytosol 14.6 37.64
CDY29195 Canola cytosol 43.57 37.11
CDY29196 Canola cytosol 44.44 37.09
CDY07824 Canola cytosol 44.23 37.04
CDY29197 Canola cytosol 45.32 36.17
CDX67783 Canola cytosol 33.33 35.83
CDX98354 Canola cytosol 33.12 35.68
CDX98355 Canola cytosol 32.68 35.55
CDX98353 Canola cytosol 33.55 35.32
CDY07837 Canola cytosol 41.39 34.93
CDX67782 Canola cytosol 33.12 34.86
CDY07822 Canola cytosol 44.44 34.46
CDX67785 Canola cytosol 14.16 33.85
CDX67788 Canola cytosol 23.53 33.33
CDY57500 Canola cytosol 33.55 32.49
CDX98357 Canola cytosol 24.4 32.37
CDY59410 Canola cytosol 34.86 31.62
CDY33289 Canola cytosol 34.64 31.42
CDX71909 Canola cytosol 33.12 29.75
CDX89015 Canola cytosol 30.07 29.11
CDY06017 Canola nucleus 35.51 28.15
CDY00610 Canola mitochondrion 29.85 26.1
GSMUA_Achr2P13780_001 Banana cytosol 18.08 20.19
CDX98352 Canola cytosol, nucleus, plasma membrane 29.63 17.92
CDY06019 Canola cytosol 33.12 17.55
CDX67781 Canola cytosol 29.85 17.5
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1UniProt:A0A078HDA0EnsemblPlants:CDY34798ProteinID:CDY34798ProteinID:CDY34798.1
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:FBDGO:GO:0003674GO:GO:0005488GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00057345001InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfPFAM:PF00646PFscan:PS50181
PANTHER:PTHR31639PANTHER:PTHR31639:SF6SMART:SM00256SMART:SM00579SUPFAM:SSF52047SUPFAM:SSF81383
UniParc:UPI0004EEA933:::::
Description
BnaA09g41650DBnaA09g41650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDA0]
Coordinates
chrLK032341:+:331006..333054
Molecular Weight (calculated)
52160.7 Da
IEP (calculated)
5.030
GRAVY (calculated)
-0.134
Length
459 amino acids
Sequence
(BLAST)
001: MDRLSSLPDE LLYHILSLLP TKSAVVTSSL SKRWLNLWKL NPNLDIDDSL FIHPQHGKGE SQHIRQSFVR FVDSVLAMQG DSPINTFSLK CITGIHPDTV
101: NRWIRNVLQR GVSDLSLFTD FTCEDTEEDS YQLPRELFLS RTLVKLNLRS EHCVDWWWPG GIWSDSLALG VLKSLSIDSD LIFCGEVEEF IPSFTALEEL
201: RMGSMEWRES DVTVSSATLR TMSLHGTGCE EFVNPTSVSF DTPNLRVLSY YDLVAEDYPL VEDEGNVLVN FGNVVKLMNG IQNVQKLSFT ADTLEVLSQC
301: CDTMPVFNNL KFLGITSEEG RGWQAMPALL KNCPRLETII LEGLLHYVTD KCGDACPCIS REGKGRSLRA CPVNRLEIQG FRATMKEMTM IKHFLDYFPG
401: LKRLDVVIED NEPTQLRNPE LSKCVKEMFS LYSRLYPSCS VELMVSSFLQ KKWRAQGHI
Best Arabidopsis Sequence Match ( AT3G58940.2 )
(BLAST)
001: MDRVSNLPEE VRCHILSFLP TKHAALTSVL SKSWLNLWKF ETNLDIDDSD FLHPEEGKAE RDEIRQSFVE FVDGVLALQG DSPIEKFSLK CITGIHPDHV
101: NRWICNVLQR GVSDLYLFTD FSDEDTEEDG GYRLPQEMFV SRTLVKLKLR SEHCVNWWHW DIGASLPNLK SLNIDSDLIF FGEMEKFLSS FPVLEEVHMA
201: NMEWRELDET MSSASLTKLS IHGTGVEEFE HPKSISIDTP NLLYLNYSDL VAEDYPLDDE GDVVLQFCNV VKLINGIQNI QTLYLTEDTL EVLTMCCESM
301: PVFNNLKTLG LKSDEGRGWQ AVPALLRNCP HLEFLIIEGL LHSVTDKCGD ACDCISREDK GRSLISCPVK KLEVRGFRGT IREKEMIRHF LEYFPCLDEM
401: EIDAEENDST NFEVPRILKV VAYRLHDVVS TEIVGHWQSS AQSGGWSQTQ MDEMYYELAP RNKERIYDMF FFMRRASSTV PPPPPQEMSQ DYLQMQLEVA
501: DLKERQRDQE AKLADLKERL RAMLDMIVDQ NPIIASALRA REATNSEREK ASSGQEMTEK ERDYDALFDI IVEQNPMLAS AVRALRATDS ERAETSSNQE
601: MTELGQATAT YFPPREGE
Arabidopsis Description
F-box/LRR-repeat protein At3g58940 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.