CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY01389
CDY29370
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58930.1	CDY01389	AT2G25700.1	21798944
AT3G58930.1	CDY29370	AT2G25700.1	21798944
AT3G58930.1	CDY43408	AT2G25700.1	21798944
AT3G58930.1	CDY44209	AT2G25700.1	21798944
AT3G58930.1	CDY63159	AT2G25700.1	21798944
AT3G58930.1	CDY67544	AT2G25700.1	21798944
AT3G58930.1	CDY68971	AT2G25700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84742	Canola	cytosol	50.56	69.01
CDY65456	Canola	peroxisome	53.95	68.79
CDX76838	Canola	cytosol	50.72	68.63
CDY34798	Canola	peroxisome	50.72	68.63
AT3G58930.1	Thale cress	cytosol	49.11	63.28
CDX95484	Canola	cytosol	30.76	54.26
CDY58541	Canola	cytosol	39.61	53.83
CDY49258	Canola	cytosol	41.22	53.67
CDX67770	Canola	cytosol	33.66	53.32
CDX98338	Canola	cytosol	34.78	53.07
CDY65605	Canola	cytosol	23.35	52.35
CDX98342	Canola	cytosol	33.17	52.28
CDY65604	Canola	cytosol	40.74	52.27
CDX67769	Canola	cytosol	34.94	52.04
CDX98339	Canola	cytosol, extracellular	33.98	51.46
CDX67768	Canola	cytosol	33.49	50.98
CDX98340	Canola	cytosol	17.71	50.23
CDY29185	Canola	cytosol	34.46	50.12
CDX98334	Canola	golgi, mitochondrion, plasma membrane	24.32	47.78
CDY00593	Canola	cytosol	28.34	47.7
CDY67935	Canola	cytosol	33.33	46.73
CDY50412	Canola	cytosol, nucleus, peroxisome	32.53	45.6
AT3G58940.1	Thale cress	cytosol	44.61	44.82
CDY18865	Canola	plastid	21.9	44.74
CDX67786	Canola	cytosol	11.76	41.01
CDY29195	Canola	cytosol	34.94	40.26
CDY07824	Canola	cytosol	34.94	39.6
CDY29197	Canola	cytosol	35.91	38.78
CDY29196	Canola	cytosol	33.98	38.36
CDX67783	Canola	cytosol	26.09	37.94
CDX98355	Canola	cytosol	25.6	37.68
CDX98354	Canola	cytosol	25.6	37.32
CDX67782	Canola	cytosol	25.93	36.93
CDY07822	Canola	cytosol	35.1	36.82
CDX98353	Canola	cytosol	25.76	36.7
CDY07837	Canola	cytosol	31.56	36.03
CDY57500	Canola	cytosol	26.41	34.6
CDX67785	Canola	cytosol	10.31	33.33
CDY59410	Canola	cytosol	26.73	32.81
CDY33289	Canola	cytosol	26.41	32.41
CDX71909	Canola	cytosol	26.41	32.09
CDX98357	Canola	cytosol	17.87	32.08
CDX67788	Canola	cytosol	16.43	31.48
CDY06017	Canola	nucleus	28.66	30.74
CDX89015	Canola	cytosol	23.19	30.38
CDY00610	Canola	mitochondrion	23.19	27.43
GSMUA_Achr2P13780_001	Banana	cytosol	14.65	22.14
CDY06019	Canola	cytosol	26.09	18.71
CDX98352	Canola	cytosol, nucleus, plasma membrane	22.38	18.31
CDX67781	Canola	cytosol	22.54	17.88

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX89484	ProteinID:CDX89484	ProteinID:CDX89484.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00149749001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR31639
PANTHER:PTHR31639:SF6	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE022F

Description

BnaC04g35030D

Coordinates

chrLK031859:+:312552..317080

Molecular Weight (calculated)

71804.1 Da

IEP (calculated)

4.703

GRAVY (calculated)

-0.237

Length

621 amino acids

Sequence
(BLAST)

001: MDRVSNLPDE LLCHVLSFLP TKSAALTSVL SKRWFNLWKL VPNLDINDSL FLHPQDGKGE RQEIQRSFVD FVDRVLAMQG DSPINNFSLK CITGRVHPDI
101: VNRWICNVLK RGVSDLSLYT HFAKDLDDYL YRLPKEMFVK LSLRNERCVD WYFRDMGSSL PMLKSLDINS DTIVCGEFEK FITSFPMLEE LEMGTMKWED
201: FNVTVSSANL RSLSLHGSGI EGWDDFENPK SFSFDAPNLL FLNYSELVPE DYPVVNMGKL LEAHINLMVT DEQMKRVREP NHDLLEGDDE VLQFSNVVKL
301: VNGTRNVQRL TLTSDTLEVL SQCCDSMPVF NNLKFLNVTS EEGRGWQAMP SILRNCPHLE TIIIQGILHY VTDECGDVCP CISREGKGRS LKSCPVKRLD
401: VFVEDNDPTQ LKNDRDTEED GYRLPRELFF SSTLVKLKLR SEHCVDWWWR RWFICSSFFS LPMLKSFDID SELVLCGEIE DFIPSFPVLE ELRMATVEGT
501: ICDSGLLHYV TDECGDACPF ISREDRGRSL RSCPVKRLEI QGFRGTMKEM NMIKHFLDYF PCLKRLDVFV EDNDPTQLRN DQVSELVIEM FELYSKLWPS
601: FNVKLLVSDF LDEKWTAQGH I

Best Arabidopsis Sequence Match ( AT3G58930.5 )
(BLAST)

001: MDRVSNLPDG VRGHILSFLP AKHIALTSVL SKSWLNLWKL IPILDIDDSE FLHPEEGKAE RLEIRQSFVD FVDRVLALQD DSPIDRFSLK CITGIHPDHV
101: NRWICNVLQR GVSDLDLFID FSYEDTQEDE DMLPQEMFVS KTLVKLKIRN DRCVDWWCGK GGTSLPMLKS LYIDSDLILW GKMKRFLSSF PVLEELRMAS
201: MEWKESHETV SSASLRKLSI LGTGCEDYVN PKSISFDTPS LLYLNYSDLV AEDYPLVNMG KLLEARINLI VKDDQIKRVR EPNNDLLQDD AGNVVLQFGN
301: VVKLMNGIQN IQILYLTADT LEVLSLCCES MPVFNNLKTL GIKSEEGRGW QAVPALLRNC PHLEYLIIEG LLHNVTDKCG DACDCISRED KGRSLASCPV
401: KKVEIQGFRG TMREINMIGH FLRSFKCLKE MGIFPEEEGP TNFENPGAFE YVEKILKLYN EISNCDVYFL VWGYMRRKWT TQ

Arabidopsis Description

F-box/LRR-repeat protein At3g58930 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXW6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.