Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98334 | Canola | golgi, mitochondrion, plasma membrane | 63.93 | 44.3 |
| CDY65605 | Canola | cytosol | 45.66 | 36.1 |
| CDX95484 | Canola | cytosol | 57.53 | 35.8 |
| CDX67768 | Canola | cytosol | 66.67 | 35.78 |
| CDX98338 | Canola | cytosol | 64.38 | 34.64 |
| CDX67770 | Canola | cytosol | 60.73 | 33.93 |
| CDX98342 | Canola | cytosol | 60.27 | 33.5 |
| CDX67769 | Canola | cytosol | 63.47 | 33.33 |
| CDX98339 | Canola | cytosol, extracellular | 61.64 | 32.93 |
| CDY18865 | Canola | plastid | 44.29 | 31.91 |
| CDX67785 | Canola | cytosol | 23.29 | 26.56 |
| AT3G58820.1 | Thale cress | cytosol | 47.95 | 25.42 |
| CDY29185 | Canola | cytosol | 47.49 | 24.36 |
| CDY58541 | Canola | cytosol | 50.68 | 24.29 |
| CDY65456 | Canola | peroxisome | 51.6 | 23.2 |
| CDX84742 | Canola | cytosol | 45.66 | 21.98 |
| CDY49258 | Canola | cytosol | 47.49 | 21.8 |
| CDY67935 | Canola | cytosol | 43.84 | 21.67 |
| CDY34798 | Canola | peroxisome | 44.75 | 21.35 |
| CDX76838 | Canola | cytosol | 43.84 | 20.91 |
| CDY65604 | Canola | cytosol | 46.12 | 20.87 |
| CDY29195 | Canola | cytosol | 48.4 | 19.67 |
| CDY50412 | Canola | cytosol, nucleus, peroxisome | 39.73 | 19.64 |
| CDY07824 | Canola | cytosol | 48.4 | 19.34 |
| CDY07837 | Canola | cytosol | 47.03 | 18.93 |
| CDX67782 | Canola | cytosol | 37.44 | 18.81 |
| CDY29197 | Canola | cytosol | 49.32 | 18.78 |
| CDY00593 | Canola | cytosol | 31.51 | 18.7 |
| CDY07822 | Canola | cytosol | 49.32 | 18.24 |
| CDX67783 | Canola | cytosol | 35.16 | 18.03 |
| CDY29196 | Canola | cytosol | 45.21 | 18.0 |
| CDX89484 | Canola | cytosol | 50.23 | 17.71 |
| CDX98354 | Canola | cytosol | 34.25 | 17.61 |
| CDX98355 | Canola | cytosol | 33.33 | 17.3 |
| CDX98357 | Canola | cytosol | 26.94 | 17.05 |
| CDX67788 | Canola | cytosol | 25.11 | 16.98 |
| CDY33289 | Canola | cytosol | 37.44 | 16.21 |
| CDY59410 | Canola | cytosol | 37.44 | 16.21 |
| CDX98353 | Canola | cytosol | 31.51 | 15.83 |
| CDX89015 | Canola | cytosol | 31.51 | 14.56 |
| CDY57500 | Canola | cytosol | 31.05 | 14.35 |
| CDY06017 | Canola | nucleus | 36.53 | 13.82 |
| CDX71909 | Canola | cytosol | 31.05 | 13.31 |
| CDY00610 | Canola | mitochondrion | 30.59 | 12.76 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 23.29 | 12.41 |
| CDX98352 | Canola | cytosol, nucleus, plasma membrane | 36.07 | 10.41 |
| CDX67781 | Canola | cytosol | 36.07 | 10.09 |
| CDY06019 | Canola | cytosol | 30.14 | 7.62 |
| CDX67786 | Canola | cytosol | 0.46 | 0.56 |
Protein Annotations
| EnsemblPlants:CDX98340 | EnsemblPlantsGene:GSBRNA2T00105890001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR31639 |
| PANTHER:PTHR31639:SF6 | ProteinID:CDX98340 | ProteinID:CDX98340.1 | UniParc:UPI0004EF2031 | MapMan:35.1 | : |
Description
BnaC06g17010D
Coordinates
chrLK031904:-:679643..684419
Molecular Weight (calculated)
25018.6 Da
IEP (calculated)
7.846
GRAVY (calculated)
0.096
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MWKGMEDLTV SSASLKTLTI KLGYFVSTLS IDTPNLLHFN YFGCVASDYP LVTMGNLVDA QINLLTKAQL AYQRKYYNGW FDVQVAIGYS NVWKLFHGIR
101: NVPHLDLFPD TFEVISMCSE SLPVFNNLKS LAIWSGEDRG WQAMPALLRN CPNLETLVIK ILKTMYVTDK CGDVCDSIYR EHKGLSLTLC PVKVMKIHGF
201: QGTMKEMAMI EHFWSIFHR
101: NVPHLDLFPD TFEVISMCSE SLPVFNNLKS LAIWSGEDRG WQAMPALLRN CPNLETLVIK ILKTMYVTDK CGDVCDSIYR EHKGLSLTLC PVKVMKIHGF
201: QGTMKEMAMI EHFWSIFHR
001: MDHVSSLPEG VLCNIFSFLT TKEAALTSIL CKRWRNLLAF VPNLVIDDSV FLHPEEGKEE RYEIQQSFME FVDRVLALQG NSPIKKFSLK FRTDFASHRV
101: NAWISNVLAR GVSELDVLVI LYGAEFLPLS PKCFKSRNLV TLKINSLGID WLAGDIFLPM LKTLVLHSVK LCVDKFFFRA LPALEELVLF AVSWRDRDVT
201: VSNASIKTLT IKFNYYLGTL SLDTPSLVSF CFSDHVAKDY PLAKMEKLSE ARISLLVTEY QIERARAPNI YWVEDDVVLR LVNVGKLMKG IRNVQYLNLS
301: PNTLEVLSKC CESMPLFNNL KSLTIESNER RGWQAMPVLL RNCPHLETLV LEGLLHHVTE KCRNACDCVS QEEKGRSLTS CQVKVLEIKG FQGTTKEMHT
401: IKHFLEHFPC LREIKIHMEE NGPTQLRVPE VSQYIAEMME HYEKSSSCNV QLLVGGYLCK KWTTQ
101: NAWISNVLAR GVSELDVLVI LYGAEFLPLS PKCFKSRNLV TLKINSLGID WLAGDIFLPM LKTLVLHSVK LCVDKFFFRA LPALEELVLF AVSWRDRDVT
201: VSNASIKTLT IKFNYYLGTL SLDTPSLVSF CFSDHVAKDY PLAKMEKLSE ARISLLVTEY QIERARAPNI YWVEDDVVLR LVNVGKLMKG IRNVQYLNLS
301: PNTLEVLSKC CESMPLFNNL KSLTIESNER RGWQAMPVLL RNCPHLETLV LEGLLHHVTE KCRNACDCVS QEEKGRSLTS CQVKVLEIKG FQGTTKEMHT
401: IKHFLEHFPC LREIKIHMEE NGPTQLRVPE VSQYIAEMME HYEKSSSCNV QLLVGGYLCK KWTTQ
Arabidopsis Description
F-box/LRR-repeat protein At1g52650 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.