CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06017	Canola	nucleus	94.09	77.03
AT3G59200.1	Thale cress	cytosol	66.03	60.19
CDX98353	Canola	cytosol	48.31	52.52
CDX67782	Canola	cytosol	47.68	51.83
CDX67786	Canola	cytosol	18.35	48.88
CDX67783	Canola	cytosol	43.04	47.78
CDX98354	Canola	cytosol	42.62	47.42
CDX98355	Canola	cytosol	41.98	47.16
CDX71909	Canola	cytosol	48.1	44.62
CDX67785	Canola	cytosol	17.3	42.71
CDX98357	Canola	cytosol	28.69	39.31
CDY67935	Canola	cytosol	36.08	38.6
CDY00593	Canola	cytosol	29.96	38.48
CDX67781	Canola	cytosol	62.66	37.93
CDX67788	Canola	cytosol	25.74	37.65
CDX98352	Canola	cytosol, nucleus, plasma membrane	59.92	37.42
CDY33289	Canola	cytosol	39.45	36.96
CDY59410	Canola	cytosol	39.24	36.76
CDY58541	Canola	cytosol	35.02	36.32
CDY49258	Canola	cytosol	35.87	35.64
CDY65604	Canola	cytosol	35.65	34.92
CDX84742	Canola	cytosol	33.33	34.73
CDX67768	Canola	cytosol	29.54	34.31
CDY65456	Canola	peroxisome	35.23	34.29
CDX98338	Canola	cytosol	29.32	34.15
CDX76838	Canola	cytosol	32.7	33.77
CDY29185	Canola	cytosol	30.38	33.72
CDY34798	Canola	peroxisome	32.49	33.55
CDX98339	Canola	cytosol, extracellular	28.9	33.41
CDX67770	Canola	cytosol	27.22	32.91
CDX98342	Canola	cytosol	27.22	32.74
CDX67769	Canola	cytosol	28.48	32.37
CDX95484	Canola	cytosol	23.84	32.1
CDY50412	Canola	cytosol, nucleus, peroxisome	29.54	31.6
CDX98340	Canola	cytosol	14.35	31.05
CDX89015	Canola	cytosol	30.38	30.38
CDX98334	Canola	golgi, mitochondrion, plasma membrane	20.25	30.38
CDY29195	Canola	cytosol	33.33	29.31
CDY18865	Canola	plastid	18.78	29.28
CDY65605	Canola	cytosol	16.88	28.88
CDY00610	Canola	mitochondrion	31.22	28.19
CDY29197	Canola	cytosol	32.49	26.78
CDY07824	Canola	cytosol	30.8	26.64
CDY07822	Canola	cytosol	33.12	26.52
CDX89484	Canola	cytosol	34.6	26.41
CDY06019	Canola	cytosol	47.68	26.1
CDY07837	Canola	cytosol	29.54	25.74
CDY29196	Canola	cytosol	29.54	25.45
GSMUA_Achr2P13780_001	Banana	cytosol	20.25	23.36

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078J4L6	EnsemblPlants:CDY57500	ProteinID:CDY57500	ProteinID:CDY57500.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00022285001	InterPro:IPR001810	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723	PFscan:PS50181
PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE4505
SEG:seg	:	:	:	:	:

Description

BnaC08g48930DBnaC08g48930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4L6]

Coordinates

chrLK033581:-:39945..41611

Molecular Weight (calculated)

53447.9 Da

IEP (calculated)

4.704

GRAVY (calculated)

-0.169

Length

474 amino acids

Sequence
(BLAST)

001: MEDMFNRLPN PLISHILSFL PTKEAASTSV LSKRWLLLFA SVTNLDFESD EESPSFVEFV NRVLALGGND SINRFSLIFT DYPDPDTVTP WILNVLRRGV
101: SELELSVSDY PLPPEIFVSK TLAKLKLGGG DGLSFSTDVK KVYLPKLKTL EIESVVFEED GVGFAKLLSG CPVLEELVLM NLGWEHWKSC SVSAKTLRKL
201: KFFCEDNDEN PKSVSFDTPN LEYLEYSDNI AKKYPRVKFR SLVEAHISLR LTEDQSADAG SSEEDEYLFE SDDDDEEKEM VGNATNFFKG ICNVQILYLY
301: LPKHWRYLLS ALTVESDEEI GWDSLPGLLK NCPNLETLVF KGLVHKSTKG CGNMCLCKPL KNSSCLSSSA VKVLKIILSV HIDDDGMEEE QIKHFLEKMP
401: RLEQLVVYFN ESYEPSVFEL SKKLQSVSTI ASPKCNLQVI SQNLSLSSTL PCALTKKWSA PPNKEYTWFL KAVT

Best Arabidopsis Sequence Match ( AT3G59200.1 )
(BLAST)

001: MDFVSRDRIS SLPNPVVSHI LSFLPTKEAA STSVLSKKWR YLFAYVTNLD FDDSDYQDGK PKSDVELSRS FMEFVDRVLA LQGNGSVNKF SLECSNYDVD
101: LARVTGWILN VLGRGVSELD LSILEYPLPS EIFVSKTLVR LKLGPANDLT LTLDRKDVFL PKLKTLYIDC VDVQERGFGF VKLLSGCPVL EELVLMNIGW
201: ENWKFCSVSV KTLKRLTFFC EETYENPKSV SFDTPNLVYL EYSDAIASKY PKVNFNSLVE AHIGLRLTED QSGDADFSEE DYFSEGDEKK QMVGNATDFL
301: KGISTVQILY LSAQAIEVLT FCCEPIPVFN NLIQLTIENN SEIRWDSLPG LLKNCPNLET LVLKRLLHKY NKACGNVCCC KRPKQPSCLS SSPVKVLKIF
401: LFDDNDEEDG SEMRQIKYFL EKMPRLEELV VYYNTAYDPA VLELSKKLQK IPKIASPKCK IQVISENLSL SSTVPSFLTT RWSSLPPEEA YPWVDSPPPQ
501: IIDPMLEYGS PPEDDDSWLY

Arabidopsis Description

F-box/LRR-repeat protein At3g59200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.