CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67782	Canola	cytosol	83.03	83.03
AT3G59210.1	Thale cress	cytosol, nucleus, peroxisome	78.21	70.45
CDY57500	Canola	cytosol	52.52	48.31
CDX67786	Canola	cytosol	19.27	47.19
CDX98355	Canola	cytosol	44.95	46.45
CDX67783	Canola	cytosol	44.95	45.9
CDX98354	Canola	cytosol	43.81	44.84
CDX71909	Canola	cytosol	52.29	44.62
CDX98357	Canola	cytosol	33.26	41.91
CDY06017	Canola	nucleus	54.82	41.28
CDX67788	Canola	cytosol	30.28	40.74
CDX67785	Canola	cytosol	17.89	40.62
CDX67768	Canola	cytosol	34.86	37.25
CDY00593	Canola	cytosol	31.19	36.86
CDY33289	Canola	cytosol	41.28	35.57
CDY59410	Canola	cytosol	41.28	35.57
CDY58541	Canola	cytosol	37.16	35.45
CDY67935	Canola	cytosol	36.01	35.44
CDX98338	Canola	cytosol	32.8	35.14
CDY49258	Canola	cytosol	38.3	35.01
CDX98339	Canola	cytosol, extracellular	32.8	34.88
CDX67770	Canola	cytosol	31.19	34.69
CDY29185	Canola	cytosol	33.95	34.66
CDX84742	Canola	cytosol	35.78	34.29
CDX98342	Canola	cytosol	30.73	34.01
CDY65604	Canola	cytosol	37.61	33.88
CDX76838	Canola	cytosol	35.55	33.77
CDY65456	Canola	peroxisome	37.61	33.68
CDY34798	Canola	peroxisome	35.32	33.55
CDX67769	Canola	cytosol	31.88	33.33
CDY50412	Canola	cytosol, nucleus, peroxisome	32.8	32.28
CDY65605	Canola	cytosol	20.41	32.13
CDX98334	Canola	golgi, mitochondrion, plasma membrane	23.17	31.96
CDX89015	Canola	cytosol	34.4	31.65
CDX95484	Canola	cytosol	25.46	31.53
CDX98340	Canola	cytosol	15.83	31.51
CDY18865	Canola	plastid	20.41	29.28
CDY00610	Canola	mitochondrion	33.95	28.19
CDY29195	Canola	cytosol	33.72	27.27
CDY07822	Canola	cytosol	35.32	26.01
CDY29197	Canola	cytosol	34.17	25.91
CDY07824	Canola	cytosol	32.57	25.91
CDX89484	Canola	cytosol	36.7	25.76
CDY06019	Canola	cytosol	50.46	25.4
CDX98352	Canola	cytosol, nucleus, plasma membrane	43.35	24.9
CDY07837	Canola	cytosol	30.96	24.82
CDY29196	Canola	cytosol	31.19	24.73
CDX67781	Canola	cytosol	44.27	24.65
GSMUA_Achr2P13780_001	Banana	cytosol	20.64	21.9

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX98353	ProteinID:CDX98353	ProteinID:CDX98353.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00105907001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PFscan:PS50181	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EF3A0F	SEG:seg	:	:	:

Description

BnaC06g17140D

Coordinates

chrLK031904:+:773143..775023

Molecular Weight (calculated)

49090.1 Da

IEP (calculated)

4.776

GRAVY (calculated)

-0.005

Length

436 amino acids

Sequence
(BLAST)

001: MSIGNMDDLP DNLLCQILSN LSTKEAAVTS LLSKRWRYLF ALVPNLDFES FSSQHTDHTS FIDFVDRVLK LRGKDHVNKF SLKCGDGFED EDVYPWISNV
101: LRHGVSDLSL HVSSSLVYWL PSKVFVSKTL VRLKIGPEDG PKVKLRNVYL PRLRTLILDS VVFVEGEIGS AKLLSGCPVL EELSLCNLEW GYWGSCYVAS
201: KILKRLTLCC AHCDDNPKSV SFDTPNVVYF KYSDNIAKKY PKLNFDSLVE ASIDIRMTND QKANVRYVSN DDEEEREMVG NATVLVMGIC NVKTLYLSYD
301: TLETLNFCCE AMPVLSNLTH LTIESNQEVG WESLPQLLKN CPNLETLVFQ GLTHKATSTC DDDDVDMVME IVMINHFLQK MLNLERLIVY YNTSIEDDLV
401: EVSSQLQMLP AAASSKCKIQ VISDSLGLSV TLPISL

Best Arabidopsis Sequence Match ( AT3G59210.2 )
(BLAST)

001: MDDCSKDIIN CLPDNLLCQI LSNLSTKEAA LTSLLSKRWR YLFALVPNLD FDVLPSLHPE VAMQDQDQTS FIDFVDRVLK LRGKDHINKF SLKCGDGIED
101: EDVFPWILNT LRHGVSDLSL HVSPSLVYWL PSKVFASKTL VRLKIGPKDG PRVKLRNVCL PKLKTLNLDS VVFEEGKIGF AKLLSGCPVL EELSLLNLAW
201: DRWDSCSVSS KILKRLTLYC AHSSRNPKSV SFDTPNVVYF EYSDNIANKY PKVNFDSLVE ASIGIRMTKV QKANARYVSD VDEETEMVGN ATDLLMGICN
301: VKTLYLSYDT LETLNLCCQV IPVFNNLTHL TIESHPELGW ESLPNLLKSC PNLGTLVFQG LLHKATDRCG DVCMCQGLEN SHSCLSSSPV KCLKILKFGE
401: TNDDDDMEIE MEQIKNFLEK MPNLEQLIIY YESSIDNDLV RVSSQLQEVP TVASLKCKIQ VISDNLSLSS TLPISLSMEN GFHL

Arabidopsis Description

F-box/LRR-repeat protein At3g59210 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW80]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.