CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29185	Canola	cytosol	61.41	77.52
CDY07824	Canola	cytosol	78.29	77.01
CDY29196	Canola	cytosol	74.95	73.45
CDY29197	Canola	cytosol	77.92	73.04
CDY07822	Canola	cytosol	76.07	69.26
CDY07837	Canola	cytosol	66.05	65.44
AT3G58950.1	Thale cress	cytosol	43.78	56.59
CDY49258	Canola	cytosol	49.72	56.18
AT3G58890.1	Thale cress	extracellular	30.06	55.29
CDY65604	Canola	cytosol	48.98	54.55
CDX98338	Canola	cytosol	38.59	51.11
CDX98342	Canola	cytosol	36.92	50.51
CDX98339	Canola	cytosol, extracellular	37.48	49.27
CDX67769	Canola	cytosol	38.03	49.16
CDX67768	Canola	cytosol	36.73	48.53
CDX98340	Canola	cytosol	19.67	48.4
CDY65605	Canola	cytosol	24.49	47.65
CDX67770	Canola	cytosol	34.51	47.45
CDY58541	Canola	cytosol	38.78	45.73
CDX84742	Canola	cytosol	37.48	44.4
CDX95484	Canola	cytosol	28.76	44.03
CDX76838	Canola	cytosol	37.29	43.79
CDY34798	Canola	peroxisome	37.11	43.57
CDY65456	Canola	peroxisome	38.59	42.71
CDY50412	Canola	cytosol, nucleus, peroxisome	35.06	42.66
CDX98334	Canola	golgi, mitochondrion, plasma membrane	24.86	42.41
CDY00593	Canola	cytosol	28.39	41.46
CDY18865	Canola	plastid	23.19	41.12
CDY67935	Canola	cytosol	33.58	40.86
CDX98355	Canola	cytosol	27.64	35.31
CDX67783	Canola	cytosol	27.83	35.13
CDX98354	Canola	cytosol	27.64	34.98
CDX89484	Canola	cytosol	40.26	34.94
CDX67785	Canola	cytosol	12.24	34.38
CDY59410	Canola	cytosol	31.91	33.99
CDY33289	Canola	cytosol	31.73	33.79
CDX67782	Canola	cytosol	27.27	33.72
CDX98353	Canola	cytosol	27.27	33.72
CDY57500	Canola	cytosol	29.31	33.33
CDX67786	Canola	cytosol	10.2	30.9
CDX98357	Canola	cytosol	19.67	30.64
CDY06017	Canola	nucleus	32.47	30.22
CDX67788	Canola	cytosol	18.0	29.94
CDX71909	Canola	cytosol	27.64	29.16
CDX89015	Canola	cytosol	25.6	29.11
CDY00610	Canola	mitochondrion	26.35	27.05
GSMUA_Achr2P13780_001	Banana	cytosol	16.14	21.17
CDX98352	Canola	cytosol, nucleus, plasma membrane	26.16	18.58
CDX67781	Canola	cytosol	26.16	18.01
CDY06019	Canola	cytosol	27.64	17.21

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078GRS8	EnsemblPlants:CDY29195	ProteinID:CDY29195	ProteinID:CDY29195.1
ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00042095001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646
PFAM:PF08387	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EE5920	SEG:seg	:	:	:	:

Description

BnaA06g25620DBnaA06g25620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRS8]

Coordinates

chrLK032233:-:127369..129221

Molecular Weight (calculated)

61596.8 Da

IEP (calculated)

4.651

GRAVY (calculated)

-0.213

Length

539 amino acids

Sequence
(BLAST)

001: MDRIGSLPND VICHILSFLT TKEAGLTSIL SKRWRNLFTL VPSLDIDDSV FLIPEEGKRE RDGILESFMD FVDRVLALQG DTHIKKFSLK CKTGIDTDRV
101: NLWICNVLQR GVKSLELVLD FLEVFLSAFP VLEEFHMADI QWPQMDESVS SQSLRKLTIY ASGFRDFRNP KSISFDTPNL VYLEYSDYVA ADYPKVNLPD
201: LAEAVLDLKL NGHDILLIRA PNDEDDVSLR LRNVWKLITG LRNVQRLIIS AETLEVLSLF CESMPVFNNL KSLHIICDAD LGWQAMPVLL RNCPHVETLV
301: LEGLLHYVTD KCGDVCDCIS REDKGRSLLS CPVKKLEIRE FQGTVREKEM IRHFLESFPC LDEMEVYADD QNATNLEVNR IFKIIAHKVD EEEVSTKTVL
401: LLYGKLFSES MSQTQMEEIS SQFTPRNNKN KYDFFYILHG APPPTQEMSQ DLKEQLDAAK TKLAELNEEY KERQRVHDAM FDGIVDQNTM IASALKARQS
501: AAESEASNDQ EKKRDFGALF EIMAYLSPDF ATALTATWD

Best Arabidopsis Sequence Match ( AT3G58950.1 )
(BLAST)

001: MDLFSSLPDE VLCHILSFLT TKEAALASVV SKRWRNQFAL VPNLDIDEEG KREREEILLS FMDFVDNVLA LQADSPIKKF SLKCKTGVHP RRLDAWARLG
101: PVLPMLKTLI IDSAWIRCDT IETFLPTFPV LEELSMSINE WPDWDETVTS ASLRKLSIFT IGCENFSNPK SISFDIPSLV YFEYYDMVAE DYPKVNLTSV
201: VEARISLLLD QDQIKRGRAP NNDEDDVLLR LRNGWKLMSG IRNVQKLYIS LDTLQVLSLC CKSMPVFNNL KLLSVKTAEN EGWEGMPVLL RNCPHLETLV
301: FEGLRHFVTN KCGDACDYVS REDKGRSLVS CPVKKLQIKG FRGTIRELEM IKHFLYSFRC LEKVEIYAEE KGRTRTDLEV PGMFELIARM LRLYNEFYSC
401: DVQFLVRSSL DKKWTAQ

Arabidopsis Description

Putative F-box protein At3g58950 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.