CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024503.1-P	Field mustard	cytosol	58.31	74.33
CDY29196	Canola	cytosol	83.84	65.09
CDY29197	Canola	cytosol	84.31	62.61
CDY29195	Canola	cytosol	77.52	61.41
CDY07824	Canola	cytosol	76.81	59.85
CDY07822	Canola	cytosol	81.73	58.95
AT3G58950.1	Thale cress	cytosol	53.86	55.16
CDY65604	Canola	cytosol	59.95	52.89
CDY49258	Canola	cytosol	59.02	52.83
CDY07837	Canola	cytosol	66.98	52.57
AT3G58890.1	Thale cress	extracellular	35.83	52.22
CDX98338	Canola	cytosol	48.48	50.86
CDX98342	Canola	cytosol	46.37	50.25
CDX98339	Canola	cytosol, extracellular	47.31	49.27
CDX67769	Canola	cytosol	47.07	48.2
CDX98340	Canola	cytosol	24.36	47.49
CDX67768	Canola	cytosol	44.96	47.06
CDY58541	Canola	cytosol	49.41	46.17
CDY65605	Canola	cytosol	29.74	45.85
CDX84742	Canola	cytosol	48.48	45.49
CDX67770	Canola	cytosol	41.69	45.41
CDX76838	Canola	cytosol	48.71	45.32
CDY34798	Canola	peroxisome	48.71	45.32
CDY65456	Canola	peroxisome	49.88	43.74
CDX98334	Canola	golgi, mitochondrion, plasma membrane	31.62	42.72
CDX95484	Canola	cytosol	35.13	42.61
CDY50412	Canola	cytosol, nucleus, peroxisome	43.79	42.21
CDY00593	Canola	cytosol	35.83	41.46
CDY67935	Canola	cytosol	42.39	40.86
CDY18865	Canola	plastid	29.04	40.79
CDX98355	Canola	cytosol	35.13	35.55
CDX67783	Canola	cytosol	34.66	34.66
CDX89484	Canola	cytosol	50.12	34.46
CDX67785	Canola	cytosol	15.46	34.38
CDX98354	Canola	cytosol	33.96	34.04
CDX98353	Canola	cytosol	34.66	33.95
CDX67782	Canola	cytosol	34.66	33.95
CDY33289	Canola	cytosol	39.11	33.0
CDY59410	Canola	cytosol	39.11	33.0
CDX89015	Canola	cytosol	33.96	30.59
CDY57500	Canola	cytosol	33.72	30.38
CDX67786	Canola	cytosol	12.65	30.34
CDX71909	Canola	cytosol	35.13	29.35
CDX67788	Canola	cytosol	22.25	29.32
CDX98357	Canola	cytosol	23.65	29.19
CDY00610	Canola	mitochondrion	34.43	28.0
CDY06017	Canola	nucleus	37.94	27.98
GSMUA_Achr2P13780_001	Banana	cytosol	20.84	21.65
CDX98352	Canola	cytosol, nucleus, plasma membrane	31.85	17.92
CDY06019	Canola	cytosol	35.6	17.55
CDX67781	Canola	cytosol	31.85	17.37

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078GRR7	EnsemblPlants:CDY29185	ProteinID:CDY29185
ProteinID:CDY29185.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00042085001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EDAF68	SEG:seg	:	:	:

Description

BnaA06g25720DBnaA06g25720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRR7]

Coordinates

chrLK032233:+:88746..90812

Molecular Weight (calculated)

48829.1 Da

IEP (calculated)

4.967

GRAVY (calculated)

-0.074

Length

427 amino acids

Sequence
(BLAST)

001: MGAEKMDRIG SLPEEVLSHI LSFLTTKEAA ITSILSKRWR NLFTLVPNLD IDDSVFLNPE EGKRERDGIL QSFMDFVDRV LALQGDTPIK KFSLKCKTGI
101: DTDRVNRWIR TNTFLPMLKT LSFESKWILL CDDLEVFLSA FPLLEEFYMA DIEWPETDES VSSQSLRKLT IYACGFEDFQ NPMSISFDTP KLVYLEYSDF
201: VAADYPKVNL PNLAEAVLDF KVSLRLGNVW KLVKGLRNVN KLFISAETLE VLSLCCESMP VFNNLKSLHI ICDADLGWQA MPALLRNCPH LETLILKGLL
301: HHVTDKCGDV CDCISREDKG RSLLSCPVKK LEIREFQGTV REKEMIRHFL ESFPCLDDME VYANQNGNDP RNVEVNRIYK IVAYKVHVVE VSTETVLQSK
401: TMSQSQMEEI SSQVIFSYIK QTITVLS

Best Arabidopsis Sequence Match ( AT3G58950.1 )
(BLAST)

001: MDLFSSLPDE VLCHILSFLT TKEAALASVV SKRWRNQFAL VPNLDIDEEG KREREEILLS FMDFVDNVLA LQADSPIKKF SLKCKTGVHP RRLDAWARLG
101: PVLPMLKTLI IDSAWIRCDT IETFLPTFPV LEELSMSINE WPDWDETVTS ASLRKLSIFT IGCENFSNPK SISFDIPSLV YFEYYDMVAE DYPKVNLTSV
201: VEARISLLLD QDQIKRGRAP NNDEDDVLLR LRNGWKLMSG IRNVQKLYIS LDTLQVLSLC CKSMPVFNNL KLLSVKTAEN EGWEGMPVLL RNCPHLETLV
301: FEGLRHFVTN KCGDACDYVS REDKGRSLVS CPVKKLQIKG FRGTIRELEM IKHFLYSFRC LEKVEIYAEE KGRTRTDLEV PGMFELIARM LRLYNEFYSC
401: DVQFLVRSSL DKKWTAQ

Arabidopsis Description

Putative F-box protein At3g58950 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXQ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.