CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00593	Canola	cytosol	78.78	94.58
AT3G58860.1	Thale cress	cytosol	70.65	68.49
CDX98338	Canola	cytosol	43.57	47.42
CDX95484	Canola	cytosol	37.02	46.59
CDX98342	Canola	cytosol	41.31	46.45
CDX98339	Canola	cytosol, extracellular	42.89	46.34
CDX67769	Canola	cytosol	43.57	46.28
CDX67770	Canola	cytosol	40.86	46.17
CDX67768	Canola	cytosol	42.44	46.08
CDY58541	Canola	cytosol	46.28	44.86
CDX98340	Canola	cytosol	21.67	43.84
CDY65605	Canola	cytosol	27.09	43.32
CDY49258	Canola	cytosol	46.28	42.98
CDX98334	Canola	golgi, mitochondrion, plasma membrane	30.47	42.72
CDX84742	Canola	cytosol	43.79	42.64
CDY29185	Canola	cytosol	40.86	42.39
CDY65604	Canola	cytosol	46.05	42.15
CDY65456	Canola	peroxisome	46.05	41.89
CDX76838	Canola	cytosol	42.66	41.18
CDY34798	Canola	peroxisome	42.66	41.18
CDY50412	Canola	cytosol, nucleus, peroxisome	40.86	40.86
CDX67786	Canola	cytosol	15.8	39.33
CDY18865	Canola	plastid	26.86	39.14
CDX67782	Canola	cytosol	36.12	36.7
CDY57500	Canola	cytosol	38.6	36.08
CDX98353	Canola	cytosol	35.44	36.01
CDX67783	Canola	cytosol	34.31	35.6
CDX98354	Canola	cytosol	33.86	35.21
CDX98355	Canola	cytosol	32.96	34.6
CDY29195	Canola	cytosol	40.86	33.58
CDX89484	Canola	cytosol	46.73	33.33
CDY07824	Canola	cytosol	40.63	32.85
CDY29197	Canola	cytosol	41.99	32.35
CDY29196	Canola	cytosol	39.73	32.0
CDY06017	Canola	nucleus	41.08	31.43
CDY33289	Canola	cytosol	35.67	31.23
CDY59410	Canola	cytosol	35.67	31.23
CDY07837	Canola	cytosol	37.92	30.88
CDY07822	Canola	cytosol	41.08	30.74
CDX71909	Canola	cytosol	34.54	29.94
CDX89015	Canola	cytosol	31.38	29.32
CDX67785	Canola	cytosol	12.64	29.17
CDY00610	Canola	mitochondrion	32.28	27.24
CDX67788	Canola	cytosol	19.64	26.85
CDX98357	Canola	cytosol	19.86	25.43
GSMUA_Achr2P13780_001	Banana	cytosol	21.44	23.11
CDX98352	Canola	cytosol, nucleus, plasma membrane	31.6	18.45
CDX67781	Canola	cytosol	31.83	18.01
CDY06019	Canola	cytosol	34.99	17.9

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078JN74	EnsemblPlants:CDY67935	ProteinID:CDY67935	ProteinID:CDY67935.1
InterPro:F-box-like_dom_sf	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00067699001
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF07723	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EEBF0F	SEG:seg	:

Description

BnaCnng57020DBnaCnng57020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JN74]

Coordinates

chrLK036670:+:1109..2616

Molecular Weight (calculated)

50615.9 Da

IEP (calculated)

6.510

GRAVY (calculated)

0.067

Length

443 amino acids

Sequence
(BLAST)

001: MDLFNKLPDP VVSHILSFLP TTKEAASTSV LAKRWRNLFA FVPNLNLDGD SKSFMDFVER VLALQGDTPI KEFSLNAKTG VDPDRVDRWI CNVLRRGVTH
101: LDLFVAFGEE YSLPHEISVS KTLVELKTGY GVDLYAWDDD MFLPNLKNLV LVSVEFGRGQ FQTLLPACPV LEGLMLLNMR WRDRNEILSS PSLKKLKISV
201: AEGCIGTFSF DTPNLDFLDY DDFVAEDYPV VNMPNIVEAG INIELTPFRV RGARDNLVKL IHGIRNVKIL YLTPVTFEIL SLYCKTMPVF ENLTTLSVKS
301: VMIQGWQAMP ILLRSCPRLE SLYIGDLLHS ITDACGDVCV CLSKWIKGLS LKSCHVKKMR ISGFRGTIRE VHMIKHFLDY LPSLKEMEIV VEENEDTMFD
401: IPKWLDIVGE TLMHFNETSS CNVIFWMHAF LYRRLTRKWS PRG

Best Arabidopsis Sequence Match ( AT3G58860.1 )
(BLAST)

001: MDSEKMDLFS KLPDEVISHI LSSLPTKEAA STSVLAKKWR YLFAFVPSLD FNDSDFLHPQ EGKREKDGIL RSFMDFVDRV LALQGASPIK KFSLNVKTGV
101: DPDRVDRWIC NVLQRGVSHL ALFMDFEEEY SLPYEISVSK TLVELKTGYG VDLYLWDDDM FLPMLKTLVL ESVEFGRGQF QTLLPACPVL EELMLLNMEW
201: KDRNVILSSS SLKNLKITSE DGCLGTLSFD TPNLVFLDYY DYVAEDYPIV NLKNLVEVGI NLVLTADRIN RARDNVWNLI HGIQNAEIFH ISPVTFEVLS
301: LSCEAMPVFK NLTTLNIRTV MQQGWQAMPL LLKNCPNLET LYLGGLLHTV TNKCGDVCDC IPRKKKGRSL MACPVNKIQI QGFRGTIREV HMIKHFLDFC
401: PSLKEMEIIV ETKEPTLFEI PKWLEIVEDT LMQYNEMSSC TINYRVLAPL YWRWTRK

Arabidopsis Description

Putative F-box protein At3g58860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.