CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29197	Canola	cytosol	87.82	84.0
CDY29185	Canola	cytosol	65.09	83.84
CDY07822	Canola	cytosol	84.73	78.72
CDY07824	Canola	cytosol	78.0	78.28
CDY29195	Canola	cytosol	73.45	74.95
CDY07837	Canola	cytosol	71.82	72.61
AT3G58950.1	Thale cress	cytosol	41.64	54.92
CDY49258	Canola	cytosol	45.82	52.83
CDY65604	Canola	cytosol	45.82	52.07
AT3G58890.1	Thale cress	extracellular	27.45	51.54
CDX98342	Canola	cytosol	34.55	48.22
CDX98338	Canola	cytosol	35.27	47.67
CDX67769	Canola	cytosol	35.09	46.28
CDX98339	Canola	cytosol, extracellular	34.36	46.1
CDY58541	Canola	cytosol	37.82	45.51
CDX76838	Canola	cytosol	37.82	45.32
CDX98340	Canola	cytosol	18.0	45.21
CDX84742	Canola	cytosol	37.27	45.05
CDX67768	Canola	cytosol	33.09	44.61
CDY34798	Canola	peroxisome	37.09	44.44
CDX67770	Canola	cytosol	31.64	44.39
CDY65605	Canola	cytosol	21.64	42.96
CDY65456	Canola	peroxisome	37.82	42.71
CDY00593	Canola	cytosol	28.36	42.28
CDY50412	Canola	cytosol, nucleus, peroxisome	33.45	41.53
CDX95484	Canola	cytosol	26.36	41.19
CDY67935	Canola	cytosol	32.0	39.73
CDY18865	Canola	plastid	21.82	39.47
CDX98334	Canola	golgi, mitochondrion, plasma membrane	22.55	39.24
CDX67785	Canola	cytosol	12.18	34.9
CDX89484	Canola	cytosol	38.36	33.98
CDX98355	Canola	cytosol	26.0	33.89
CDX67783	Canola	cytosol	25.45	32.79
CDX98354	Canola	cytosol	25.09	32.39
CDY33289	Canola	cytosol	28.73	31.23
CDY59410	Canola	cytosol	28.73	31.23
CDX98353	Canola	cytosol	24.73	31.19
CDX67782	Canola	cytosol	24.55	30.96
CDX67786	Canola	cytosol	10.0	30.9
CDY57500	Canola	cytosol	25.45	29.54
CDX98357	Canola	cytosol	17.82	28.32
CDX67788	Canola	cytosol	16.55	28.09
CDX89015	Canola	cytosol	24.0	27.85
CDY06017	Canola	nucleus	28.73	27.29
CDX71909	Canola	cytosol	24.55	26.42
CDY00610	Canola	mitochondrion	24.73	25.9
GSMUA_Achr2P13780_001	Banana	cytosol	14.73	19.71
CDX98352	Canola	cytosol, nucleus, plasma membrane	24.0	17.39
CDX67781	Canola	cytosol	24.55	17.24
CDY06019	Canola	cytosol	24.73	15.7

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078GUI0	EnsemblPlants:CDY29196	ProteinID:CDY29196
ProteinID:CDY29196.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00042097001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646
PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00256	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EEF5AE	SEG:seg	:	:

Description

BnaA06g25610DBnaA06g25610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUI0]

Coordinates

chrLK032233:-:138795..140907

Molecular Weight (calculated)

62778.9 Da

IEP (calculated)

4.803

GRAVY (calculated)

-0.388

Length

550 amino acids

Sequence
(BLAST)

001: MDRIGSLPEE VLSHILSFLT TKEAAITSIL SKRWRNLFTL VPSLDIDDSV FLNPEEGKRE RDGILQSFMD FVDKVLASQG DTPIKKFSLK CKTGIDTDRV
101: NQWICTDTFL PMLKTLRFES TWILLCDDLE VFLSAFPVLE EFYMADIEWP QSDQSASSQS LRKLTIHAGG FQDFRNPKRI SFDSPSLVYL EYSDFVAADY
201: PKIDLIREPD DENVVSLRLR NVWKLIRGLR NVNKLFISAE TLEALSLCCE SMPVFNNLKS LHIICEADLG WQAMPALLRN CPRLETLILK GLLHHVTDKC
301: GDACDCISRE DKGRSLSSCP VKKLEIRGFQ GTVREKEMIR HFLESFPCLD EMEVYADQSD NDPTNVEVNR IYKIIAYKVH GKEISTHTVL QSKGMSQSQM
401: EEISSQFTPR NNRNKYGMVY ILHGTHPPPQ EISQYYIKEL LNEEYKERQR VHDAMFDGIV EQYPMIASAL KARQSAADSE ASNDQEKKRD FEALLEIMTD
501: LYPDFASALK AMRGTDLERG EPSRDQGEMA ELGQTTPTDM AADLLPRDGD

Best Arabidopsis Sequence Match ( AT3G58930.2 )
(BLAST)

001: MDRVSNLPDG VRGHILSFLP AKHIALTSVL SKSWLNLWKL IPILDIDDSE FLHPEEGKAE RLEIRQSFVD FVDRVLALQD DSPIDRFSLK CITEDEDMLP
101: QEMFVSKTLV KLKIRNDRCV DWWCGKGGTS LPMLKSLYID SDLILWGKMK RFLSSFPVLE ELRMASMEWK ESHETVSSAS LRKLSILGTG CEDYVNPKSI
201: SFDTPSLLYL NYSDLVAEDY PLVNMGKLLE ARINLIVKDD QIKRVREPNN DLLQDDAGNV VLQFGNVVKL MNGIQNIQIL YLTADTLEVL SLCCESMPVF
301: NNLKTLGIKS EEGRGWQAVP ALLRNCPHLE YLIIEGLLHN VTDKCGDACD CISREDKGRS LASCPVKKVE IQGFRGTMRE INMIGHFLRS FKCLKEMGIF
401: PEEEGPTNFE NPGAFEYVEK ILKLYNEISN CDVYFLVWGY MRRKWTTQ

Arabidopsis Description

F-box/LRR-repeat protein At3g58930 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXW6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.