CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67770	Canola	cytosol	76.1	79.59
CDX98338	Canola	cytosol	73.41	73.96
CDX67769	Canola	cytosol	71.22	70.02
CDX67768	Canola	cytosol	68.29	68.63
CDX98342	Canola	cytosol	65.37	68.02
CDX95484	Canola	cytosol	54.63	63.64
CDX98334	Canola	golgi, mitochondrion, plasma membrane	48.78	63.29
CDX98340	Canola	cytosol	32.93	61.64
AT3G58820.1	Thale cress	cytosol	57.32	56.9
CDY18865	Canola	plastid	39.27	52.96
CDY29185	Canola	cytosol	49.27	47.31
CDY58541	Canola	cytosol	50.0	44.86
CDY00593	Canola	cytosol	39.51	43.9
CDY49258	Canola	cytosol	50.98	43.82
CDX84742	Canola	cytosol	48.29	43.52
CDY65604	Canola	cytosol	51.22	43.39
CDY67935	Canola	cytosol	46.34	42.89
CDY65456	Canola	peroxisome	50.0	42.09
CDX76838	Canola	cytosol	46.59	41.61
CDY34798	Canola	peroxisome	46.34	41.39
CDY65605	Canola	cytosol	27.8	41.16
CDY50412	Canola	cytosol, nucleus, peroxisome	42.2	39.05
CDY29195	Canola	cytosol	49.27	37.48
CDY07824	Canola	cytosol	47.32	35.4
CDY29196	Canola	cytosol	46.1	34.36
CDX89484	Canola	cytosol	51.46	33.98
CDX67782	Canola	cytosol	36.1	33.95
CDY29197	Canola	cytosol	47.07	33.57
CDX98353	Canola	cytosol	34.88	32.8
CDX67785	Canola	cytosol	15.12	32.29
CDX67783	Canola	cytosol	33.17	31.85
CDX98355	Canola	cytosol	32.68	31.75
CDY07822	Canola	cytosol	45.37	31.42
CDX98354	Canola	cytosol	32.44	31.22
CDX67786	Canola	cytosol	13.41	30.9
CDY59410	Canola	cytosol	37.07	30.04
CDY33289	Canola	cytosol	37.07	30.04
CDX67788	Canola	cytosol	23.41	29.63
CDY07837	Canola	cytosol	38.78	29.23
CDY57500	Canola	cytosol	33.41	28.9
CDX71909	Canola	cytosol	35.85	28.77
CDX98357	Canola	cytosol	24.15	28.61
CDX89015	Canola	cytosol	30.49	26.37
CDY06017	Canola	nucleus	36.59	25.91
CDY00610	Canola	mitochondrion	32.93	25.71
GSMUA_Achr2P13780_001	Banana	cytosol	22.44	22.38
CDY06019	Canola	cytosol	35.85	16.97
CDX98352	Canola	cytosol, nucleus, plasma membrane	29.51	15.94
CDX67781	Canola	cytosol	30.24	15.84

Protein Annotations

EnsemblPlants:CDX98339	EnsemblPlantsGene:GSBRNA2T00105888001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6
ProteinID:CDX98339	ProteinID:CDX98339.1	SEG:seg	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EDED95	MapMan:35.1	:	:	:	:

Description

BnaC06g17000D

Coordinates

chrLK031904:-:660053..661633

Molecular Weight (calculated)

46438.6 Da

IEP (calculated)

6.053

GRAVY (calculated)

0.036

Length

410 amino acids

Sequence
(BLAST)

001: MDRVSILADE VLCHILSFLT AKEAALTSIL AKRWRNLLAF VPCITIDDSV FLHPEEGKQD REEVKQSFMD FVDRVLALQG NSPLKVFSLK CLTVVDTDRV
101: DGWVSNALAR AVSELDLKII IPSDKGEFYK LSPKCFDCST LFETLLHALP SLEELLLVYV MWKGMEDVTV SSSSLKTLTM TLDYTLKTLS FDTPSLLHFK
201: YSGYAALDYP VGNMGNLVDA QIDFFLNAHR YSKVCKLFHS IPYVGNHFLL PDTLEVLSMC SESMPVFTNL KSLTIRSDED RGWQAMPALL RNCPHLETLG
301: LVHHVTDKCG NVCGCISRED KGLSLKLCPV KEMKIHEFQG TMEEMAIIKH FLDYFPCLKE MEVYAEENNN PTRLGNHEVC KRVSEMFQLY NKLSSCNVKV
401: KVMVGDVLCR

Best Arabidopsis Sequence Match ( AT1G52650.1 )
(BLAST)

001: MDHVSSLPEG VLCNIFSFLT TKEAALTSIL CKRWRNLLAF VPNLVIDDSV FLHPEEGKEE RYEIQQSFME FVDRVLALQG NSPIKKFSLK FRTDFASHRV
101: NAWISNVLAR GVSELDVLVI LYGAEFLPLS PKCFKSRNLV TLKINSLGID WLAGDIFLPM LKTLVLHSVK LCVDKFFFRA LPALEELVLF AVSWRDRDVT
201: VSNASIKTLT IKFNYYLGTL SLDTPSLVSF CFSDHVAKDY PLAKMEKLSE ARISLLVTEY QIERARAPNI YWVEDDVVLR LVNVGKLMKG IRNVQYLNLS
301: PNTLEVLSKC CESMPLFNNL KSLTIESNER RGWQAMPVLL RNCPHLETLV LEGLLHHVTE KCRNACDCVS QEEKGRSLTS CQVKVLEIKG FQGTTKEMHT
401: IKHFLEHFPC LREIKIHMEE NGPTQLRVPE VSQYIAEMME HYEKSSSCNV QLLVGGYLCK KWTTQ

Arabidopsis Description

F-box/LRR-repeat protein At1g52650 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.