CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98338	Canola	cytosol	71.57	71.74
CDX67770	Canola	cytosol	67.65	70.41
CDX98339	Canola	cytosol, extracellular	68.63	68.29
CDX98340	Canola	cytosol	35.78	66.67
CDX98342	Canola	cytosol	63.73	65.99
CDX67769	Canola	cytosol	67.4	65.95
CDX98334	Canola	golgi, mitochondrion, plasma membrane	49.02	63.29
CDX95484	Canola	cytosol	54.17	62.78
AT3G58820.1	Thale cress	cytosol	55.64	54.96
CDY18865	Canola	plastid	38.24	51.32
CDY29185	Canola	cytosol	47.06	44.96
CDY65605	Canola	cytosol	30.39	44.77
CDY58541	Canola	cytosol	49.26	43.98
CDY00593	Canola	cytosol	39.46	43.63
CDX84742	Canola	cytosol	48.53	43.52
CDY49258	Canola	cytosol	50.0	42.77
CDY67935	Canola	cytosol	46.08	42.44
CDY65456	Canola	peroxisome	50.0	41.89
CDY65604	Canola	cytosol	49.51	41.74
CDY34798	Canola	peroxisome	46.81	41.61
CDY50412	Canola	cytosol, nucleus, peroxisome	44.36	40.86
CDX76838	Canola	cytosol	45.83	40.74
CDY29195	Canola	cytosol	48.53	36.73
CDX98353	Canola	cytosol	37.25	34.86
CDX67782	Canola	cytosol	37.25	34.86
CDY29197	Canola	cytosol	47.55	33.74
CDX89484	Canola	cytosol	50.98	33.49
CDX67786	Canola	cytosol	14.46	33.15
CDY29196	Canola	cytosol	44.61	33.09
CDY07824	Canola	cytosol	44.36	33.03
CDX98355	Canola	cytosol	34.07	32.94
CDX67785	Canola	cytosol	15.44	32.81
CDX67783	Canola	cytosol	34.07	32.55
CDX98354	Canola	cytosol	33.82	32.39
CDY07822	Canola	cytosol	46.81	32.26
CDX67788	Canola	cytosol	24.51	30.86
CDY07837	Canola	cytosol	39.71	29.78
CDX71909	Canola	cytosol	37.01	29.55
CDY57500	Canola	cytosol	34.31	29.54
CDX98357	Canola	cytosol	25.0	29.48
CDX89015	Canola	cytosol	34.07	29.32
CDY59410	Canola	cytosol	36.03	29.05
CDY33289	Canola	cytosol	35.78	28.85
CDY00610	Canola	mitochondrion	34.8	27.05
CDY06017	Canola	nucleus	37.5	26.42
GSMUA_Achr2P13780_001	Banana	cytosol	22.55	22.38
CDY06019	Canola	cytosol	36.76	17.32
CDX98352	Canola	cytosol, nucleus, plasma membrane	30.88	16.6
CDX67781	Canola	cytosol	31.37	16.35

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX67768	ProteinID:CDX67768	ProteinID:CDX67768.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00098958001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFAM:PF08387
PFscan:PS50181	PANTHER:PTHR31639	PANTHER:PTHR31639:SF6	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EDCF6F	:	:	:	:	:

Description

BnaA07g18080D

Coordinates

chrLK031787:-:2173764..2175285

Molecular Weight (calculated)

46549.7 Da

IEP (calculated)

5.428

GRAVY (calculated)

0.093

Length

408 amino acids

Sequence
(BLAST)

001: MDHISNLPDE VLCHILSFLT TKEAALTSIL AKRWRNLLAF VPCLPIDDSI EDIRQSFIDF VDRVLELQGN SPLNKFSLEC VTNVADTDRL DGWISNVLAR
101: GSVSDLVLKI SIRSYQGDNY PLSPKCFEFH VCPNEFEILL HALPSLEELV LDCVDWKGMD IKVSSASLKT LTMSLCCWLG TLSFDTPSLL HFKCSGYIAW
201: DYPLVNMGNL VDAQMIIFLL NEHQLNKLKQ LRGPDNVWKL FHGIRNVRNL DLFPDTFEVL SLCSESMPVF NNLKSLTIRS DEVRGWQAMP ALLRNCPHLE
301: TLVIKGLVHQ VTDLCGDVFD GISREDKGLS LTLCPVKVMK IHGFQGTMKE MAMIEYFLEY FPSLKEMQVY AEENSTTQLR NREVSKLVLR IFQLYNKFSS
401: CSVQLFFI

Best Arabidopsis Sequence Match ( AT5G38390.1 )
(BLAST)

001: MDLLSNLPYE LLCHILSFLT TKEAALTSVL SKRWRNLIAF VPNVDIVDHD IRELFMDFVD RVLALQGNSP INKFSLDCSG VDSDRVDCWI QNVMVRGVSE
101: LNLSIFVDSV FEDDYNLFPK VFENKKLVKL GLSYISWLDG SIFLPMLKTL VLESVLLSVE KFEILLHALP ALEELVMNNI YWKERDVVDL IVSSESLKTL
201: TINFIVCTHT LSFDTPILAY LSYSGYVVDD YAEAKMENLF EARISLLVVE GDISRVRALI NNDLLEDDEY DVLQFENVWK LMNGIRNIRC LYLSPNTLEV
301: LSLCCESMPV FKNLKSLSIK SAENRGWQAM PVLLRNCPHL ETLVLEGLLH HVTDKCGDAC DCVSREDKGR SLTSCPVKVL EIKGFQGTTK EMNMIKHFLE
401: YFPCLKELKM YMEENDPAQL RVPEVITGEM MERYKKSSSC NVQLLVGGKL YKKWTP

Arabidopsis Description

Putative F-box protein At5g38390 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF23]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.