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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 1
  • extracellular 7
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G58950.1 Thale cress cytosol 55.29 38.85
CDY29185 Canola cytosol 52.22 35.83
AT5G38396.1 Thale cress cytosol 53.92 34.2
CDY49258 Canola cytosol 54.95 33.75
AT3G58930.1 Thale cress cytosol 55.29 33.61
CDY65604 Canola cytosol 53.92 32.64
AT3G58900.4 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole 51.54 32.47
AT4G13960.2 Thale cress cytosol 50.85 32.11
AT1G52650.1 Thale cress cytosol 49.49 31.18
AT5G38390.1 Thale cress vacuole 48.46 31.14
AT3G03030.1 Thale cress cytosol 49.49 30.59
AT5G38386.2 Thale cress cytosol 41.98 30.52
AT3G03040.1 Thale cress cytosol 48.81 30.3
AT3G59000.1 Thale cress cytosol 50.51 30.14
CDY07824 Canola cytosol 56.31 30.11
CDY29195 Canola cytosol 55.29 30.06
CDY07837 Canola cytosol 53.58 28.86
AT3G58820.1 Thale cress cytosol 40.61 28.81
CDY29197 Canola cytosol 56.31 28.7
CDY07822 Canola cytosol 55.97 27.7
Bra024503.1-P Field mustard cytosol 31.4 27.46
CDY29196 Canola cytosol 51.54 27.45
AT3G58880.1 Thale cress cytosol 42.32 27.31
AT3G58860.1 Thale cress cytosol 41.98 26.91
AT3G58910.1 Thale cress cytosol, nucleus, peroxisome 19.45 26.64
AT3G59250.1 Thale cress cytosol 36.18 24.94
AT4G14096.2 Thale cress cytosol 36.52 22.86
AT3G59210.1 Thale cress cytosol, nucleus, peroxisome 37.2 22.52
AT3G58940.1 Thale cress cytosol 47.44 22.49
AT3G59270.1 Thale cress cytosol 25.6 22.39
AT1G58310.1 Thale cress cytosol 36.86 21.39
AT3G59200.1 Thale cress cytosol 37.88 21.35
AT4G14103.2 Thale cress cytosol 32.08 21.22
AT3G59180.1 Thale cress plasma membrane 34.13 21.05
AT2G42720.1 Thale cress cytosol, nucleus, peroxisome 31.4 20.77
AT5G35926.2 Thale cress nucleus 30.38 20.55
AT3G59170.1 Thale cress cytosol 32.76 20.3
AT3G59230.1 Thale cress cytosol 33.79 20.16
AT3G59190.2 Thale cress cytosol, nucleus, plastid 35.49 20.04
AT2G42730.1 Thale cress cytosol 31.06 19.91
AT3G59160.1 Thale cress cytosol 31.06 19.61
AT5G41840.1 Thale cress cytosol 35.49 19.26
AT5G41830.2 Thale cress cytosol 33.45 19.07
AT3G59240.1 Thale cress cytosol 32.76 19.05
AT4G00320.1 Thale cress cytosol 32.76 18.93
AT3G59150.1 Thale cress cytosol 30.38 18.74
AT3G49150.1 Thale cress cytosol 29.01 18.2
AT5G41630.1 Thale cress cytosol 27.3 17.58
AT1G56610.1 Thale cress endoplasmic reticulum 30.38 16.64
AT5G38391.1 Thale cress cytosol 9.56 15.73
GSMUA_Achr2P13780_001 Banana cytosol 17.06 12.17
AT5G38392.1 Thale cress cytosol 6.48 8.76
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:825058ProteinID:AEE79844.1ArrayExpress:AT3G58890EnsemblPlantsGene:AT3G58890
RefSeq:AT3G58890TAIR:AT3G58890RefSeq:AT3G58890-TAIR-GEnsemblPlants:AT3G58890.1TAIR:AT3G58890.1ProteinID:CAB88306.1
GO:GO:0005575GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0031225InterPro:IPR032675
InterPro:LRR_dom_sfRefSeq:NP_191448.1PANTHER:PTHR31639PANTHER:PTHR31639:SF6UniProt:Q9LXR3SUPFAM:SSF52047
TMHMM:TMhelixUniParc:UPI00000A1CFASEG:seg:::
Description
RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LXR3]
Coordinates
chr3:+:21771046..21772577
Molecular Weight (calculated)
33139.1 Da
IEP (calculated)
7.595
GRAVY (calculated)
0.360
Length
293 amino acids
Sequence
(BLAST)
001: MQTLFLVPAQ QLVLQLASGG TFLPMLKTLI IKAKWIGSEW DETVSSASLR KLVIYCQGGC ADLLNSKSIS FDTPSLLYLV YSVFVAEDYP KVNLTNLVEA
101: KFNLMLLDEQ IEQIREPNDE DDVFLRLGNV LKLFAGIRNV QKLYLSANIL EVLSLCCESF PVFNNLKILR IRSAEDRGWQ AMPVLLRNCP HLETLVLEGL
201: IHYVTGECGN ACDCKSREGI VSSLLSCPVK KVQIKGFKGT MRESSMIWHF MTSFPCLKFL VYTPMDKKWI FGVAFSNVRV FIIDIVMIII FLS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.