Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G59180.1 | Thale cress | plasma membrane | 56.65 | 61.89 |
| AT4G14103.2 | Thale cress | cytosol | 46.05 | 53.95 |
| AT4G14096.2 | Thale cress | cytosol | 47.98 | 53.21 |
| AT3G59250.1 | Thale cress | cytosol | 42.77 | 52.24 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 47.4 | 50.83 |
| AT3G59230.1 | Thale cress | cytosol | 46.82 | 49.49 |
| AT1G58310.1 | Thale cress | cytosol | 47.21 | 48.51 |
| AT3G59160.1 | Thale cress | cytosol | 43.35 | 48.49 |
| AT3G59170.1 | Thale cress | cytosol | 43.35 | 47.57 |
| AT3G59200.1 | Thale cress | cytosol | 47.21 | 47.12 |
| AT3G59240.1 | Thale cress | cytosol | 45.47 | 46.83 |
| AT3G59270.1 | Thale cress | cytosol | 29.67 | 45.97 |
| AT3G49150.1 | Thale cress | cytosol | 41.04 | 45.61 |
| AT4G00320.1 | Thale cress | cytosol | 43.16 | 44.18 |
| AT5G41840.1 | Thale cress | cytosol | 45.86 | 44.07 |
| AT5G41830.2 | Thale cress | cytosol | 43.16 | 43.58 |
| AT5G38392.1 | Thale cress | cytosol | 17.73 | 42.4 |
| AT5G41630.1 | Thale cress | cytosol | 36.61 | 41.76 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 17.15 | 41.59 |
| AT3G58950.1 | Thale cress | cytosol | 32.18 | 40.05 |
| AT3G58860.1 | Thale cress | cytosol | 35.26 | 40.04 |
| AT5G38386.2 | Thale cress | cytosol | 30.64 | 39.45 |
| AT5G38391.1 | Thale cress | cytosol | 13.49 | 39.33 |
| AT5G38396.1 | Thale cress | cytosol | 34.3 | 38.53 |
| AT2G42730.1 | Thale cress | cytosol | 33.91 | 38.51 |
| AT5G38390.1 | Thale cress | vacuole | 33.72 | 38.38 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 34.3 | 38.28 |
| AT1G52650.1 | Thale cress | cytosol | 34.3 | 38.28 |
| AT4G13960.2 | Thale cress | cytosol | 34.1 | 38.15 |
| AT5G35926.2 | Thale cress | nucleus | 31.41 | 37.64 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 31.79 | 37.25 |
| AT3G59000.1 | Thale cress | cytosol | 35.07 | 37.07 |
| AT3G58820.1 | Thale cress | cytosol | 28.9 | 36.32 |
| AT3G58930.1 | Thale cress | cytosol | 33.14 | 35.68 |
| AT3G03030.1 | Thale cress | cytosol | 32.56 | 35.65 |
| AT3G58890.1 | Thale cress | extracellular | 20.04 | 35.49 |
| AT3G03040.1 | Thale cress | cytosol | 32.18 | 35.38 |
| AT3G58880.1 | Thale cress | cytosol | 30.06 | 34.36 |
| AT3G59150.1 | Thale cress | cytosol | 29.29 | 32.0 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 30.44 | 29.53 |
| AT3G58940.1 | Thale cress | cytosol | 32.18 | 27.02 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 19.46 | 24.57 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825088 | UniProt:A0A1I9LSN3 | ProteinID:ANM65591.1 | ArrayExpress:AT3G59190 |
| EnsemblPlantsGene:AT3G59190 | RefSeq:AT3G59190 | TAIR:AT3G59190 | RefSeq:AT3G59190-TAIR-G | EnsemblPlants:AT3G59190.2 | Unigene:At.50290 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_001327549.1 | PFAM:PF00646 |
| PFAM:PF07723 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | SMART:SM00579 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI000848ACAC | SEG:seg | : | : | : |
Description
F-box/RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN3]
Coordinates
chr3:+:21884426..21886808
Molecular Weight (calculated)
59029.2 Da
IEP (calculated)
5.559
GRAVY (calculated)
-0.142
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKRMDSGS KDIISNLPDA LLCHVLSFLP TTEAASTSVL AKRWRFLLAF VPNLDLDNMI YDRPKMGRRK RLELRKSFKL FVDRVMALQG NAPLKKFSLR
101: CKIGSDPSRV NGWVLKVLDR GVEELDLYIA SEYEYPLPPK VLMTKTLVSL KVSGTDEFTI DVGEFFLPKL KTLHLSAISF GDEGGPPFAK LISACHALEE
201: LVMIKMMWDY WEFCSVSSPS LKRVSIDCEN IDENPKSVSF DTPNLVYLEF TDTVAVKYPK VNFDSLVEAS IGLRMTPDQV FDARDLVNRH HGYKRCKGAN
301: AADFMMGVCN VKTMYLSSEA LEVLTFCCKK AIPVFNNLIH LTVETDERVD WESLPILLKN CPNLETLIFE GLHYGDLNQC FDKDYSFKDT NECYGDQGDT
401: CQCKPWYGTP VWLSSSPVKI LKVLKFGQIS SYKDDMERQT DLIEHFLESM PNLEQVILFY DTTYDDDLKI VSTQLQMLEK VASPKCKIQV ISDNISYSFT
501: VYSSSSTKGL NFFKDTFPV
101: CKIGSDPSRV NGWVLKVLDR GVEELDLYIA SEYEYPLPPK VLMTKTLVSL KVSGTDEFTI DVGEFFLPKL KTLHLSAISF GDEGGPPFAK LISACHALEE
201: LVMIKMMWDY WEFCSVSSPS LKRVSIDCEN IDENPKSVSF DTPNLVYLEF TDTVAVKYPK VNFDSLVEAS IGLRMTPDQV FDARDLVNRH HGYKRCKGAN
301: AADFMMGVCN VKTMYLSSEA LEVLTFCCKK AIPVFNNLIH LTVETDERVD WESLPILLKN CPNLETLIFE GLHYGDLNQC FDKDYSFKDT NECYGDQGDT
401: CQCKPWYGTP VWLSSSPVKI LKVLKFGQIS SYKDDMERQT DLIEHFLESM PNLEQVILFY DTTYDDDLKI VSTQLQMLEK VASPKCKIQV ISDNISYSFT
501: VYSSSSTKGL NFFKDTFPV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.