Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G42730.1 | Thale cress | cytosol | 57.11 | 55.36 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 19.41 | 40.19 |
| AT5G38392.1 | Thale cress | cytosol | 18.51 | 37.79 |
| AT3G59150.1 | Thale cress | cytosol | 40.18 | 37.47 |
| AT4G14096.2 | Thale cress | cytosol | 39.28 | 37.18 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 38.83 | 36.99 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 40.18 | 36.78 |
| AT3G59230.1 | Thale cress | cytosol | 40.41 | 36.46 |
| AT5G38396.1 | Thale cress | cytosol | 37.92 | 36.36 |
| AT4G14103.2 | Thale cress | cytosol | 36.34 | 36.34 |
| AT5G38386.2 | Thale cress | cytosol | 32.96 | 36.23 |
| AT5G38390.1 | Thale cress | vacuole | 37.25 | 36.18 |
| AT3G59170.1 | Thale cress | cytosol | 38.37 | 35.94 |
| AT3G59250.1 | Thale cress | cytosol | 34.31 | 35.76 |
| AT3G59160.1 | Thale cress | cytosol | 37.25 | 35.56 |
| AT3G58950.1 | Thale cress | cytosol | 33.41 | 35.49 |
| AT3G58820.1 | Thale cress | cytosol | 32.51 | 34.87 |
| AT3G59000.1 | Thale cress | cytosol | 38.6 | 34.83 |
| AT4G13960.2 | Thale cress | cytosol | 36.34 | 34.7 |
| AT1G58310.1 | Thale cress | cytosol | 39.5 | 34.65 |
| AT3G58860.1 | Thale cress | cytosol | 35.44 | 34.35 |
| AT1G52650.1 | Thale cress | cytosol | 35.89 | 34.19 |
| AT3G58880.1 | Thale cress | cytosol | 34.99 | 34.14 |
| AT3G03030.1 | Thale cress | cytosol | 35.44 | 33.12 |
| AT3G59240.1 | Thale cress | cytosol | 37.47 | 32.94 |
| AT3G58930.1 | Thale cress | cytosol | 35.67 | 32.78 |
| AT3G59200.1 | Thale cress | cytosol | 38.37 | 32.69 |
| AT5G38391.1 | Thale cress | cytosol | 13.09 | 32.58 |
| AT5G41830.2 | Thale cress | cytosol | 37.7 | 32.49 |
| AT3G03040.1 | Thale cress | cytosol | 34.54 | 32.42 |
| AT4G00320.1 | Thale cress | cytosol | 36.79 | 32.15 |
| AT5G41840.1 | Thale cress | cytosol | 39.05 | 32.04 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 37.25 | 31.79 |
| AT3G49150.1 | Thale cress | cytosol | 33.41 | 31.69 |
| AT3G58890.1 | Thale cress | extracellular | 20.77 | 31.4 |
| AT3G59270.1 | Thale cress | cytosol | 23.25 | 30.75 |
| AT3G59180.1 | Thale cress | plasma membrane | 32.96 | 30.74 |
| AT5G35926.2 | Thale cress | nucleus | 28.44 | 29.1 |
| AT5G41630.1 | Thale cress | cytosol | 29.8 | 29.01 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 30.25 | 25.05 |
| AT3G58940.1 | Thale cress | cytosol | 32.51 | 23.3 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 20.32 | 21.9 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:818872 | UniProt:A0A178VV59 | ProteinID:AAD21743.1 | ProteinID:AEC10160.1 |
| ArrayExpress:AT2G42720 | EnsemblPlantsGene:AT2G42720 | RefSeq:AT2G42720 | TAIR:AT2G42720 | RefSeq:AT2G42720-TAIR-G | EnsemblPlants:AT2G42720.1 |
| TAIR:AT2G42720.1 | EMBL:AY144114 | EMBL:AY649302 | Unigene:At.36978 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_181800.2 | ProteinID:OAP09718.1 | PFAM:PF00646 |
| PFAM:PF07723 | PO:PO:0000084 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020094 |
| PO:PO:0025022 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q6DR13 | SMART:SM00256 |
| SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0000196E87 | SEG:seg | : |
Description
F-box/LRR-repeat protein At2g42720 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR13]
Coordinates
chr2:+:17785354..17787421
Molecular Weight (calculated)
50734.2 Da
IEP (calculated)
8.806
GRAVY (calculated)
0.003
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRISSLPDE ILEHILSFLS TKEAALTSSL STRWKNVFVF VPSLHLDYAR QHENPREFID FVDFVNTLFN RKGNSPIKKL ALKIHLKDNQ SLQNQTHVQS
101: WIHRVLSRGG VTDLDLFITF KGKFQLVPLL IFKSNTLVKL RLGRGFTIKL CHENVYLPML KTLCLDTVDF DGDHNVFETL LPRCPLLEEL VLEDQRWKQW
201: CGSVSSPSLK RLRIRFFHIP IISLDVPGLV YLELSCIFGS KYANVNLDSL VEARLNHWVE EQELRKLRDG SSHLVPADMM DLITGIRKVK VLHLTSDALE
301: LFYFSGQELP MFDNLVYLSI ASDKKQGWQI LPLLIKNSPN LETLVFKGLE HYTTKQCGDA CVCSGILGKS SSCLSSSRVK VLEIWSYQGT SKELKQMGHF
401: LMKLQFLELV KIRAVSNLQV PIDIQYLLKL PRASSNCKIQ AIF
101: WIHRVLSRGG VTDLDLFITF KGKFQLVPLL IFKSNTLVKL RLGRGFTIKL CHENVYLPML KTLCLDTVDF DGDHNVFETL LPRCPLLEEL VLEDQRWKQW
201: CGSVSSPSLK RLRIRFFHIP IISLDVPGLV YLELSCIFGS KYANVNLDSL VEARLNHWVE EQELRKLRDG SSHLVPADMM DLITGIRKVK VLHLTSDALE
301: LFYFSGQELP MFDNLVYLSI ASDKKQGWQI LPLLIKNSPN LETLVFKGLE HYTTKQCGDA CVCSGILGKS SSCLSSSRVK VLEIWSYQGT SKELKQMGHF
401: LMKLQFLELV KIRAVSNLQV PIDIQYLLKL PRASSNCKIQ AIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.