Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38390.1 | Thale cress | vacuole | 74.44 | 65.79 |
| AT5G38396.1 | Thale cress | cytosol | 64.02 | 55.84 |
| AT1G52650.1 | Thale cress | cytosol | 63.77 | 55.27 |
| AT4G13960.2 | Thale cress | cytosol | 62.78 | 54.53 |
| AT3G58820.1 | Thale cress | cytosol | 55.58 | 54.24 |
| AT3G59000.1 | Thale cress | cytosol | 64.27 | 52.75 |
| AT3G58950.1 | Thale cress | cytosol | 50.62 | 48.92 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 55.58 | 48.17 |
| AT3G58930.1 | Thale cress | cytosol | 54.09 | 45.23 |
| AT5G38391.1 | Thale cress | cytosol | 19.85 | 44.94 |
| AT5G38392.1 | Thale cress | cytosol | 24.07 | 44.7 |
| AT3G03030.1 | Thale cress | cytosol | 52.36 | 44.51 |
| AT3G03040.1 | Thale cress | cytosol | 52.11 | 44.49 |
| AT3G58860.1 | Thale cress | cytosol | 49.88 | 43.98 |
| AT3G58880.1 | Thale cress | cytosol | 48.88 | 43.39 |
| AT3G58890.1 | Thale cress | extracellular | 30.52 | 41.98 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 21.09 | 39.72 |
| AT4G14096.2 | Thale cress | cytosol | 41.69 | 35.9 |
| AT3G59250.1 | Thale cress | cytosol | 37.72 | 35.76 |
| AT4G14103.2 | Thale cress | cytosol | 37.72 | 34.31 |
| AT2G42730.1 | Thale cress | cytosol | 38.71 | 34.14 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 40.69 | 33.88 |
| AT1G58310.1 | Thale cress | cytosol | 42.18 | 33.66 |
| AT3G59170.1 | Thale cress | cytosol | 38.71 | 32.98 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 36.23 | 32.96 |
| AT3G58940.1 | Thale cress | cytosol | 50.37 | 32.85 |
| AT3G59230.1 | Thale cress | cytosol | 39.7 | 32.59 |
| AT3G59160.1 | Thale cress | cytosol | 37.47 | 32.54 |
| AT3G59270.1 | Thale cress | cytosol | 27.05 | 32.54 |
| AT3G59200.1 | Thale cress | cytosol | 40.69 | 31.54 |
| AT3G59240.1 | Thale cress | cytosol | 38.71 | 30.95 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 39.45 | 30.64 |
| AT3G49150.1 | Thale cress | cytosol | 35.48 | 30.62 |
| AT5G41840.1 | Thale cress | cytosol | 39.45 | 29.44 |
| AT3G59150.1 | Thale cress | cytosol | 34.49 | 29.26 |
| AT4G00320.1 | Thale cress | cytosol | 36.48 | 28.99 |
| AT5G41830.2 | Thale cress | cytosol | 35.98 | 28.21 |
| AT5G41630.1 | Thale cress | cytosol | 31.76 | 28.13 |
| AT3G59180.1 | Thale cress | plasma membrane | 32.26 | 27.37 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 33.0 | 24.86 |
| AT5G35926.2 | Thale cress | nucleus | 25.31 | 23.56 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 20.6 | 20.19 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:833823 | EMBL:AB005248 | ProteinID:AED94307.1 | ProteinID:ANM69322.1 |
| ArrayExpress:AT5G38386 | EnsemblPlantsGene:AT5G38386 | RefSeq:AT5G38386 | TAIR:AT5G38386 | RefSeq:AT5G38386-TAIR-G | EnsemblPlants:AT5G38386.2 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | RefSeq:NP_001331014.1 | RefSeq:NP_680363.1 |
| PFAM:PF00646 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q3E8L5 | SMART:SM00256 |
| SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0000162793 | : | : |
Description
Putative F-box/LRR-repeat protein At5g38386 [Source:UniProtKB/Swiss-Prot;Acc:Q3E8L5]
Coordinates
chr5:+:15362774..15364815
Molecular Weight (calculated)
46541.9 Da
IEP (calculated)
6.730
GRAVY (calculated)
-0.023
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHLSNLPDE LLCHIMSFLT TKEAALISVL SKRWRNLIAF VPNLDIFDCD ILHWEVRKEE RDDIRQLFMD FVDRVLALQG NSPLKKFSLC CGGGSYSDRV
101: DCWIQNVMVR GVSELDLSMI FDTSYHMYPQ VFENKKLNFE IFLRALPALE ELVMNHIYWK ELDVNVHVSV SSASLKTLTI KCIVCLHTKS FDTPSLAYLS
201: YSDYAMGDYP VAKMENLFEA RISLFVPEDD ISRLMNSIRN VRYLYFSRDT LEVLSLCCES MPVFKNLKSL SIKSVESRGW QAMPVLLRNC PHLETLVLEA
301: LLHHVTDKCG DACACVSREE KGRSLKSCPV KVLEIKEFQG TMKEMHMIKH FLDYLPCLKE MKISYMKKND HTTQFRVIPQ VIAEMVEHYN KLSNCNVQLV
401: VSG
101: DCWIQNVMVR GVSELDLSMI FDTSYHMYPQ VFENKKLNFE IFLRALPALE ELVMNHIYWK ELDVNVHVSV SSASLKTLTI KCIVCLHTKS FDTPSLAYLS
201: YSDYAMGDYP VAKMENLFEA RISLFVPEDD ISRLMNSIRN VRYLYFSRDT LEVLSLCCES MPVFKNLKSL SIKSVESRGW QAMPVLLRNC PHLETLVLEA
301: LLHHVTDKCG DACACVSREE KGRSLKSCPV KVLEIKEFQG TMKEMHMIKH FLDYLPCLKE MKISYMKKND HTTQFRVIPQ VIAEMVEHYN KLSNCNVQLV
401: VSG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.