Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G13960.2 | Thale cress | cytosol | 76.34 | 76.51 |
| AT5G38390.1 | Thale cress | vacuole | 63.66 | 64.91 |
| AT5G38396.1 | Thale cress | cytosol | 63.87 | 64.29 |
| AT5G38386.2 | Thale cress | cytosol | 55.27 | 63.77 |
| AT3G58820.1 | Thale cress | cytosol | 54.84 | 61.74 |
| AT3G59000.1 | Thale cress | cytosol | 64.95 | 61.51 |
| AT5G38392.1 | Thale cress | cytosol | 26.02 | 55.76 |
| AT3G58950.1 | Thale cress | cytosol | 49.25 | 54.92 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 53.33 | 53.33 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 23.87 | 51.87 |
| AT5G38391.1 | Thale cress | cytosol | 19.78 | 51.69 |
| AT3G03040.1 | Thale cress | cytosol | 51.83 | 51.06 |
| AT3G03030.1 | Thale cress | cytosol | 52.04 | 51.05 |
| AT3G58930.1 | Thale cress | cytosol | 52.9 | 51.04 |
| AT3G58890.1 | Thale cress | extracellular | 31.18 | 49.49 |
| AT3G58860.1 | Thale cress | cytosol | 46.88 | 47.7 |
| AT3G58880.1 | Thale cress | cytosol | 45.81 | 46.92 |
| AT4G14096.2 | Thale cress | cytosol | 39.14 | 38.89 |
| AT3G59250.1 | Thale cress | cytosol | 35.48 | 38.82 |
| AT4G14103.2 | Thale cress | cytosol | 36.56 | 38.37 |
| AT1G58310.1 | Thale cress | cytosol | 41.51 | 38.22 |
| AT2G42730.1 | Thale cress | cytosol | 36.99 | 37.64 |
| AT3G59230.1 | Thale cress | cytosol | 38.92 | 36.86 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 38.28 | 36.78 |
| AT3G59170.1 | Thale cress | cytosol | 37.2 | 36.58 |
| AT3G58940.1 | Thale cress | cytosol | 47.96 | 36.08 |
| AT3G59200.1 | Thale cress | cytosol | 40.22 | 35.96 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 34.19 | 35.89 |
| AT3G59160.1 | Thale cress | cytosol | 35.48 | 35.56 |
| AT3G49150.1 | Thale cress | cytosol | 35.05 | 34.9 |
| AT3G59270.1 | Thale cress | cytosol | 24.73 | 34.33 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 38.28 | 34.3 |
| AT3G59240.1 | Thale cress | cytosol | 36.77 | 33.93 |
| AT5G41840.1 | Thale cress | cytosol | 37.85 | 32.59 |
| AT5G41630.1 | Thale cress | cytosol | 31.83 | 32.53 |
| AT4G00320.1 | Thale cress | cytosol | 35.27 | 32.35 |
| AT5G41830.2 | Thale cress | cytosol | 35.7 | 32.3 |
| AT3G59180.1 | Thale cress | plasma membrane | 32.9 | 32.21 |
| AT3G59150.1 | Thale cress | cytosol | 32.9 | 32.21 |
| AT5G35926.2 | Thale cress | nucleus | 25.16 | 27.02 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 29.46 | 25.61 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 20.65 | 23.36 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:841697 | ProteinID:AAD55600.1 | ProteinID:AEE32834.2 | EMBL:AK175612 |
| EMBL:AK175616 | ArrayExpress:AT1G52650 | EnsemblPlantsGene:AT1G52650 | RefSeq:AT1G52650 | TAIR:AT1G52650 | RefSeq:AT1G52650-TAIR-G |
| EnsemblPlants:AT1G52650.1 | TAIR:AT1G52650.1 | EMBL:BT010887 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| RefSeq:NP_175674.3 | PFAM:PF00646 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | UniProt:Q9SSR7 |
| SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000A3380 | : | : |
Description
F-box/LRR-repeat protein At1g52650 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR7]
Coordinates
chr1:+:19610856..19612417
Molecular Weight (calculated)
53162.0 Da
IEP (calculated)
7.625
GRAVY (calculated)
-0.002
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHVSSLPEG VLCNIFSFLT TKEAALTSIL CKRWRNLLAF VPNLVIDDSV FLHPEEGKEE RYEIQQSFME FVDRVLALQG NSPIKKFSLK FRTDFASHRV
101: NAWISNVLAR GVSELDVLVI LYGAEFLPLS PKCFKSRNLV TLKINSLGID WLAGDIFLPM LKTLVLHSVK LCVDKFFFRA LPALEELVLF AVSWRDRDVT
201: VSNASIKTLT IKFNYYLGTL SLDTPSLVSF CFSDHVAKDY PLAKMEKLSE ARISLLVTEY QIERARAPNI YWVEDDVVLR LVNVGKLMKG IRNVQYLNLS
301: PNTLEVLSKC CESMPLFNNL KSLTIESNER RGWQAMPVLL RNCPHLETLV LEGLLHHVTE KCRNACDCVS QEEKGRSLTS CQVKVLEIKG FQGTTKEMHT
401: IKHFLEHFPC LREIKIHMEE NGPTQLRVPE VSQYIAEMME HYEKSSSCNV QLLVGGYLCK KWTTQ
101: NAWISNVLAR GVSELDVLVI LYGAEFLPLS PKCFKSRNLV TLKINSLGID WLAGDIFLPM LKTLVLHSVK LCVDKFFFRA LPALEELVLF AVSWRDRDVT
201: VSNASIKTLT IKFNYYLGTL SLDTPSLVSF CFSDHVAKDY PLAKMEKLSE ARISLLVTEY QIERARAPNI YWVEDDVVLR LVNVGKLMKG IRNVQYLNLS
301: PNTLEVLSKC CESMPLFNNL KSLTIESNER RGWQAMPVLL RNCPHLETLV LEGLLHHVTE KCRNACDCVS QEEKGRSLTS CQVKVLEIKG FQGTTKEMHT
401: IKHFLEHFPC LREIKIHMEE NGPTQLRVPE VSQYIAEMME HYEKSSSCNV QLLVGGYLCK KWTTQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.